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Report for Sequence Feature Glyma06g04575

Feature Type:gene_model
Chromosome:Gm06
Start:3236994
stop:3238893
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g04575
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G67260AT Annotation by Michelle Graham. TAIR10: CYCLIN D3;2 | chr5:26836313-26837665 FORWARD LENGTH=367 SoyBaseE_val: 9.00E-83ISS
GO:0010440GO-bp Annotation by Michelle Graham. GO Biological Process: stomatal lineage progression SoyBaseN/AISS
GO:0042127GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell proliferation SoyBaseN/AISS
GO:0048316GO-bp Annotation by Michelle Graham. GO Biological Process: seed development SoyBaseN/AISS
GO:0051726GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell cycle SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004693GO-mf Annotation by Michelle Graham. GO Molecular Function: cyclin-dependent protein kinase activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
KOG0656 KOG G1/S-specific cyclin D JGI ISS
PTHR10177Panther CYCLINS JGI ISS
PTHR10177:SF76Panther CYCLIN-D JGI ISS
PF00134PFAM Cyclin, N-terminal domain JGI ISS
PF02984PFAM Cyclin, C-terminal domain JGI ISS
UniRef100_G7J6Z8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cyclin D3-1 n=2 Tax=Medicago truncatula RepID=G7J6Z8_MEDTR SoyBaseE_val: 5.00E-147ISS
UniRef100_I1K823UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K823_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g04575
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g04575 not represented in the dataset
Glyma06g04575 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04575
ParalogEvidenceComments
Glyma04g04460 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04575 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g042900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g04575
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g04575
>Glyma06g04575.1   sequence type=CDS   gene model=Glyma06g04575   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTTACCACCATCATGACCACACCAACCGGAAATCCCTTTTGGACACCCTATACTGCTCCGAAGCAGAGGAGGACTACGGTCATTTCCTAAACAACTCCTCCCCTGCGTCCCCTCCTTTCTTGCTCCAAAGCGACATGTTTTCGGACGAACAAGAGTTGACATCGCTGCTGGGGAAAGAACACCACAACCCTCTAAGCACCTGTCTCCAAACCAACCCTGCCTTGGACTTTGCTCGCCGGGAAGCCGTGGAGTGGATGCTCAAAGTCAACTCCCATTACTCTTTCTCTGCTCTCACCGCTGTTCTTTCGGTCAACTACTTTGACCGTTTTCTCTTCAGCTTCCGCTTTCAGAATGACAAGCCATGGATGGTTCAGCTCGCTGCCGTCGCTTGCCTCTCCATCGCTGCCAAAGTTGAGGAGACGCACGTTCCCTTTCTTATTGACCTTCAACAAGTGGATGAGAGTAGATACTTGTTTGAAGCCAAAACTATTAAAAAGATGGAGATTTTGGTCCTTTCCACTCTTGGATGGAAGATGAACCCCCCAACCCCTCTCTCGTTTCTTGATTACTTCACAAGAAGGCTTGGATCGAAGGATCATCTCTGCTGGGAGTTCCTCAGCAAGTCTCAAGGCGTTCTTCTCTCCCTCCTTGGAGATTCGAGGTTTATGAGTTATCTACCTTCTGTATTGGCAACTGCTACGATGATGCACGTTGTGAAAAGCGTGGAGCCTGGTCTAGAAGCTGAATACAAGAGCCAGCTCTTTGGTATTCTCAGAATCGACAAGGAGAAGCCTGAGAAGGTGAATTCTTGTTGCAAGCTGTTGTTGGAGGTGTGGTCAGGGTACGAGGAGGAGGAGCAGGAGCAGGGGAAGCAATGCATGAAACGCAAGTTTGGAATAGGGTCGATTCCTGGAAGCCCAAACGGCGTGATGGATGTGTCGTTTAGCTGTGATAGTAGCTCCAATGACTCTTCGGTCTCTTCCTCACCGGAACCTTTGTCAAAGAAGAGTAGAAGTGAAGAACAAGAGCAGCTTCTTCTACCAAACCCAAACCATTCCAACTCAGATTTTCTCCATCGCCTTTAA
Predicted protein sequences of Glyma06g04575
>Glyma06g04575.1   sequence type=predicted peptide   gene model=Glyma06g04575   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAYHHHDHTNRKSLLDTLYCSEAEEDYGHFLNNSSPASPPFLLQSDMFSDEQELTSLLGKEHHNPLSTCLQTNPALDFARREAVEWMLKVNSHYSFSALTAVLSVNYFDRFLFSFRFQNDKPWMVQLAAVACLSIAAKVEETHVPFLIDLQQVDESRYLFEAKTIKKMEILVLSTLGWKMNPPTPLSFLDYFTRRLGSKDHLCWEFLSKSQGVLLSLLGDSRFMSYLPSVLATATMMHVVKSVEPGLEAEYKSQLFGILRIDKEKPEKVNSCCKLLLEVWSGYEEEEQEQGKQCMKRKFGIGSIPGSPNGVMDVSFSCDSSSNDSSVSSSPEPLSKKSRSEEQEQLLLPNPNHSNSDFLHRL*






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