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Report for Sequence Feature Glyma06g04560

Feature Type:gene_model
Chromosome:Gm06
Start:3219824
stop:3221038
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g04560
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G07400AT Annotation by Michelle Graham. TAIR10: VIER F-box proteine 3 | chr4:4197847-4199511 REVERSE LENGTH=554 SoyBaseE_val: 1.00E-94ISS
GO:0006511GO-bp Annotation by Michelle Graham. GO Biological Process: ubiquitin-dependent protein catabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0004842GO-mf Annotation by Michelle Graham. GO Molecular Function: ubiquitin-protein ligase activity SoyBaseN/AISS
PTHR23125Panther F-BOX/LEUCINE RICH REPEAT PROTEIN JGI ISS
PTHR23125:SF44Panther SKIP-2, ARATH JGI ISS
PF00646PFAM F-box domain JGI ISS
UniRef100_B9R772UniRef Annotation by Michelle Graham. Most informative UniRef hit: Skip-2, putative n=1 Tax=Ricinus communis RepID=B9R772_RICCO SoyBaseE_val: 2.00E-104ISS
UniRef100_I1K822UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K822_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g04560
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04560
ParalogEvidenceComments
Glyma04g04435 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04560 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g042800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g04560
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g04560
>Glyma06g04560.1   sequence type=CDS   gene model=Glyma06g04560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGCGGCGTTGCAGCGGTAACCATTGACGACATCCCCGACAACTGCTTGGCTTGCATTTTCCAGTTATTTCCCCCCGCCGACCAGAAGAAGTTGTCCCTCGTTTGTCGCCGCTGGCTCAAGGTTGAAGGACATACCCATCACCGTCTCTGCCTCACCCTTCCTTACTCATCAGTCCTTGCATCTATTTTTTCTCGTTTCGACTCCGTCACCGACCTCACTCTCCAATGCCCTAATCTCATGAGCATGTGCGACGGAAATCTAGTCGTCATTTCAGACCTCTGCCCTAATCTCATTCGCCTCCAAATCACCAAGTGCTCCTATCTCTCCTACGCTGGCTTGGAGGTCTTAGCCAGGAGTTGCGAGCGTTTAAAAAGTTTCTCTTGTACATCTTGCACTTTTGGACCCAACTCCATTGACGCACTTATACATCATTGCACTACTCTCGAACAACTCTCCATCGAGTATTCTACTGTCACAACCCACGGAGCTCAATTCCTAAATTTCTATCCTTTGATTCGCGCCAAGAATTTGACTACTGTGAAGATTGTTCAGTGCTCTGTTGAGGAGTACTGGGATATGTTTTTTCATTCGTTGGCGAGCCAGGTTACGAGCTTGCTGGAAGTCCACCTCGATGGGTGCGGAGTTAGCGATAATGGTTTGAGAGCGATTTCAAAATTACCAAATTTAGAAACTCTGCATCTGGTGAAGACCCATAAGTGCACCCACGCAGGACTGGTTGCAGTTGCGGAGGGATGCAACAAGAGTTTAAGAAAACTTTGTATTAATGTGTCAGATTGGAAGGGCACCAACAAAATAGGTGACAAAGGTTTGATAGCGTTTGCTAAGTGTTGTAGTAATCTTCAAGAATTGGTTCTCATTGGTATGAATCCAAGCAAAGCGAGTTTGAAAATTTTGGCATCCAATTGCCAGAGTCTAGAGCATTTGGGGTTGTGGGGAAGCAATAAGTTTGGCGACACTGAGATATGCTGCATTGCTGGAAAATGTGTGGCGTTGAAGGAACTCCACATCGAGCGTTGCCCACGTGTTTATGATCGTGACATCAAGACGTTGGCTGCTAAGTGTCCCAATTTGGTGAGAGTGAAGGTTTTCGAATGTAAATGGGTCACTGAAAGGGATGAGTACGTGCGCTACCACCGCCGTTTAGTACATGTGACTTGCAAGCCACGTACTGCATGTCGATCACCCTTGTAG
Predicted protein sequences of Glyma06g04560
>Glyma06g04560.1   sequence type=predicted peptide   gene model=Glyma06g04560   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGGVAAVTIDDIPDNCLACIFQLFPPADQKKLSLVCRRWLKVEGHTHHRLCLTLPYSSVLASIFSRFDSVTDLTLQCPNLMSMCDGNLVVISDLCPNLIRLQITKCSYLSYAGLEVLARSCERLKSFSCTSCTFGPNSIDALIHHCTTLEQLSIEYSTVTTHGAQFLNFYPLIRAKNLTTVKIVQCSVEEYWDMFFHSLASQVTSLLEVHLDGCGVSDNGLRAISKLPNLETLHLVKTHKCTHAGLVAVAEGCNKSLRKLCINVSDWKGTNKIGDKGLIAFAKCCSNLQELVLIGMNPSKASLKILASNCQSLEHLGLWGSNKFGDTEICCIAGKCVALKELHIERCPRVYDRDIKTLAAKCPNLVRVKVFECKWVTERDEYVRYHRRLVHVTCKPRTACRSPL*






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