Glyma06g04530 - SoyBase

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Report for Sequence Feature Glyma06g04530

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3199363
stop:	3202150
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04530

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G43020	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich repeat protein kinase family protein \| chr5:17255426-17257742 REVERSE LENGTH=669	SoyBase	E_val: 5.00E-93	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG2345	KOG	Serine/threonine protein kinase/TGF-beta stimulated factor	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
UniRef100_G7J6Z2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Disease resistance protein n=1 Tax=Medicago truncatula RepID=G7J6Z2_MEDTR	SoyBase	E_val: 2.00E-135	ISS
UniRef100_I1K819	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K819_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g04530

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04530

Paralog	Evidence	Comments
Glyma04g04390	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04530 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g042500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04530

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g04530

Limit To All Plant Sequences

>Glyma06g04530.2   sequence type=CDS   gene model=Glyma06g04530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAATTCCTACTTTCCTTGTATCGTAGCGTATGCAATGGACAAATCCACATTTGGCAGTGTGATCCCAACACACGAAAATCACTTGAGTTCTGAGGTTGGTCCAAGAATGGCGATTGATCCACACTTATTACTGTTCCTGCTTCTGGCCCCGTCAAACGCACATTGCTCCAAACTCCAACGCCGTCATCTTCCTCCCTTTGTTTTCACCGACGCAACCGCCCTCCTCGTCTTCAAACTAAAAGCCGACGTTAACAACCACCTTGACTTCTCCCCCCTCACGCGCGGCCTCCGCTTCTGCGCGTGGCATGGCGTGGAATGCAACGGCCCCAAAGTGCTGCGTCTCGTTCTCCAAAACTTAGATCTCGGAGGCGCGTGGGCTCCCAAAACACTCACGCGTCTCGACCAGCTCCGAGTCCTCAGCTTGCAGAACAACTCACTCACCGGACCCATTCCAGACCTCACCGGCCTCTTCAATCTCAAAAGTCTCTTCCTTGATAACAACCACTTCACCGCCTCTCTCCCTCCCTCACTCTTCTCTCTCCACCGTCTCCGAAACTTGGATTTCTCTCACAACAACTTCTCCGGACCTATTCCCACCGCCTTCACCACCCTAGACCGCCTCCACAGCCTCCTTTTAAGCTTCAACTCCTTCAACGGTTCAATCCCCCCGTTTAACCAATCCTCTCTCAAAATCTTCCGAGCCTCCGCCAACAACCTCTCCGGCGCGGTTCCCGTGACGCCGACGGTCTTCCGTTTTCCGCCTTCTTCCTTCGCGTTAAACCCTCAACTCTGCGGCGAAATCATCCGCGTACAATGCCGTCCCGCACAGCCTTTCTTCGGACCCGTGGCGCCGCCTACGGCTGCGCTCGGCCAGAACGCGCAGGTTCACGGCGTCAACGGAATTATCCGGCAGCCGTACGAGAAGAAGCGCCACGACCGGAGGGCGCTGATTATTGGGTTCTCGGCCGGGATATTCGTTCTGGTTTGCTCGCTGGCGTGCTTGGCGGCGGCGGTGAGGAAGCAGAGGAGTCGGAGCAAGAAGGACGAGAGGACGGGGATGATGGCGGCTGATGCGGCGGCGAGGGAGGAGGGCGCGGCGGTTATGCGGATGGAGATGGAGGAGAAAGTAAAGAGAGCGGAGGTGGCGAAGAGTGGGGGTGAGGCGCAGGTGTACACGCTGGAGCAGCTGATGAAAGGTTCGAGATCAAGCAGGGCAAGGCCATTGCATTGGACATCGTGCTTAAAAATAGCAGAGGACGTAGCACAAGGTCTGGCCTTCATCCACCAGGCATGGAGATTGGTCCATGGCAATCTCAAGTCCTCCAATGTTCTTCTTGGACCGGATTTTGAGGCATGCATTACTGATTACTGCCTTTCTGTGTTGACTCACCCATCCATATTCGATGAAGATGGGGACTCAGCAGCATACAGAGCTCCAGAAACTCGCAACCCCAATCATCACCCAACCCACAAATCCGATGTTTATGCGTATGGGATTTTGTTGCTTGAGCTTCTGACGGGGAAATTTCCCTCCGAGCTCCCATTCATGGTTCCTGGTGACATTTGGGTGAGGTCCATCAGGGATGACAATGAGAACGAAGATAACCGAATGTACATGCTTCTTCAGGTGGCTACAACTTGTAGCTTGACCTCACCTGAGCAGAGGCCAACTATGTGGCAGGTCTTGAAGATGTTGCAGGAAATCAAAGAGATTGTACTGTTGGAGGATAGTAGTCAATTAGACCTACGCAGTAGTAATGCCATACCTTAA

Predicted protein sequences of Glyma06g04530

Limit To All Plant Sequences

>Glyma06g04530.2   sequence type=predicted peptide   gene model=Glyma06g04530   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MNSYFPCIVAYAMDKSTFGSVIPTHENHLSSEVGPRMAIDPHLLLFLLLAPSNAHCSKLQRRHLPPFVFTDATALLVFKLKADVNNHLDFSPLTRGLRFCAWHGVECNGPKVLRLVLQNLDLGGAWAPKTLTRLDQLRVLSLQNNSLTGPIPDLTGLFNLKSLFLDNNHFTASLPPSLFSLHRLRNLDFSHNNFSGPIPTAFTTLDRLHSLLLSFNSFNGSIPPFNQSSLKIFRASANNLSGAVPVTPTVFRFPPSSFALNPQLCGEIIRVQCRPAQPFFGPVAPPTAALGQNAQVHGVNGIIRQPYEKKRHDRRALIIGFSAGIFVLVCSLACLAAAVRKQRSRSKKDERTGMMAADAAAREEGAAVMRMEMEEKVKRAEVAKSGGEAQVYTLEQLMKGSRSSRARPLHWTSCLKIAEDVAQGLAFIHQAWRLVHGNLKSSNVLLGPDFEACITDYCLSVLTHPSIFDEDGDSAAYRAPETRNPNHHPTHKSDVYAYGILLLELLTGKFPSELPFMVPGDIWVRSIRDDNENEDNRMYMLLQVATTCSLTSPEQRPTMWQVLKMLQEIKEIVLLEDSSQLDLRSSNAIP*

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