Glyma06g04490 - SoyBase

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Report for Sequence Feature Glyma06g04490

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3151377
stop:	3153511
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04490

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G46768	AT	Annotation by Michelle Graham. TAIR10: related to AP2 1 \| chr1:17266046-17266507 REVERSE LENGTH=153	SoyBase	E_val: 9.00E-50	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009409	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to cold	SoyBase	N/A	ISS
GO:0009414	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to water deprivation	SoyBase	N/A	ISS
GO:0045893	GO-bp	Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
PF00847	PFAM	AP2 domain	JGI		ISS
UniRef100_C5IU97	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Drought responsive element binding protein 2 n=1 Tax=Glycine max RepID=C5IU97_SOYBN	SoyBase	E_val: 1.00E-114	ISS
UniRef100_C5IU97	UniRef	Annotation by Michelle Graham. Best UniRef hit: Drought responsive element binding protein 2 n=1 Tax=Glycine max RepID=C5IU97_SOYBN	SoyBase	E_val: 1.00E-114	ISS

Expression Patterns of Glyma06g04490

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04490

Paralog	Evidence	Comments
Glyma04g04355	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04490 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g042100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04490

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g04490

Limit To All Plant Sequences

>Glyma06g04490.3   sequence type=transcript   gene model=Glyma06g04490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AGGAACAAAAATGGGTTGGAAATGGAAATGGAGAGTGAGAGAGATAGGTGTGATGGATTGTGTCGGCCATCTTTGGATTTATCTTAAAGAAAGCTCAACGTGGCGGCCGTACCAGACGACAGACTAGAAGCCAAGTGATATGGAAGAAGCGGGTTTAGGAGATTGTTGTTCCTCTAATACGACTATTACGAGGAAAAGCGAGAAGCGAAAGCAGCAGCACCAACAACAAGAGAAGCCATACAGAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCGGAGATTAGAGAACCCAACAAGAGGTCGAGGATCTGGTTGGGTTCTTACGCCACCCCCGTCGCCGCCGCACGCGCCTACGACACCGCCGTCTTCCACCTCCGAGGCCCTTCCGCTCGCCTTAACTTCCCCGAATTGCTGTCCCAGGACGACGACGTTTCGACCCAACAACAGGGCAAGATGTCCGCCGATTCAATTCGCAAAAAAGCGACCCAAGTCGGCGCCAGAGTCGACGCGCTCCAAACCGCGCTTCAGCAATCCTCGTCGACACACTCCATTAGTTCCAGCCACGTCAGCTATGAGAAACCAGACTTGAACGAGTATCCCAAACCTGAAGATTAGTAATTTCCTTCAACCTTCAAGATTAATATTGATCCACCAATCATGGGTTCTGATGTGACTTATATATAGGGCTTCAACTTGCCCTCTTCACCTATGTTAATTTGAAAAGAAAAAACTTTTATATTTGTCATATGATTTATCTGAGTAAATATTTTTTTCCAGTTTATTTAATTAATATTAGAAAGTGTAGGAAGAAATAGACACACCTGATGAGAATTGAGATGAGGCTAATTAACTTGTTAATGAGGTGAGTAACTCCTTTAACTATATATAAATTAAGGGGTATATATATTATTAGTTGCTCACCTCATGTTGTTGCTCATCTCACGAAGAAACTCATTTTAGATTACTTTTTTCCTTTCATTATGTGTATGCTGGAGCGGTGGACTGGTAGCTACATAGATTCTCGCTATGATGGGGCATATGATCATGAGGTCTTTTCTCAGTGTGAAAAAAGGCCAAGGGTGAAGAGATAAAGATAGGAACAGCAGTGGCCCAACAAAGCCGCATTAATATGAAACAAACAAACACATAATGTTTCACTTGTCGAACAGTGCTAACAAGTGGATAGAGAGATAAGGAAGAATTGAGCACCAAAAGCATCAGTTGCCCATGACACCCCACAAAACTTCTTTTTTTCTTTTTCTTAAAAGAATATGCGAGATAGGCGGAGAACAGGGTGGCTCTATCTCAAAGTGAGGTTGTCACTTGTCACAGTCATGGGAAAGTTGGAGTTTAGGATCAGTTGCGTACTTTCGTTTGATACACATTGTAAGAGTAGGGCCTCAGCCAGCTCTTCATTTTTTTTTCCTTTAGTTTTCCACTTAGTATTCTTGTACAACACATTTCCTTAAAAAAATGCTGCATGCCGTGAAAACATTTCAACAAATAGCGTTTAAATGATGTGAT

Coding sequences of Glyma06g04490

Limit To All Plant Sequences

>Glyma06g04490.2   sequence type=CDS   gene model=Glyma06g04490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGCGGGTTTAGGAGATTGTTGTTCCTCTAATACGACTATTACGAGGAAAAGCGAGAAGCGAAAGCAGCAGCACCAACAACAAGAGAAGCCATACAGAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCGGAGATTAGAGAACCCAACAAGAGGTCGAGGATCTGGTTGGGTTCTTACGCCACCCCCGTCGCCGCCGCACGCGCCTACGACACCGCCGTCTTCCACCTCCGAGGCCCTTCCGCTCGCCTTAACTTCCCCGAATTGCTGTCCCAGGACGACGACGTTTCGACCCAACAACAGGGCAAGATGTCCGCCGATTCAATTCGCAAAAAAGCGACCCAAGTCGGCGCCAGAGTCGACGCGCTCCAAACCGCGCTTCAGCAATCCTCGTCGACACACTCCATTAGTTCCAGCCACGTCAGCTATGAGAAACCAGACTTGAACGAGTATCCCAAACCTGAAGATTAG

>Glyma06g04490.3   sequence type=CDS   gene model=Glyma06g04490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGAAGCGGGTTTAGGAGATTGTTGTTCCTCTAATACGACTATTACGAGGAAAAGCGAGAAGCGAAAGCAGCAGCACCAACAACAAGAGAAGCCATACAGAGGAATAAGGATGAGGAAGTGGGGCAAGTGGGTGGCGGAGATTAGAGAACCCAACAAGAGGTCGAGGATCTGGTTGGGTTCTTACGCCACCCCCGTCGCCGCCGCACGCGCCTACGACACCGCCGTCTTCCACCTCCGAGGCCCTTCCGCTCGCCTTAACTTCCCCGAATTGCTGTCCCAGGACGACGACGTTTCGACCCAACAACAGGGCAAGATGTCCGCCGATTCAATTCGCAAAAAAGCGACCCAAGTCGGCGCCAGAGTCGACGCGCTCCAAACCGCGCTTCAGCAATCCTCGTCGACACACTCCATTAGTTCCAGCCACGTCAGCTATGAGAAACCAGACTTGAACGAGTATCCCAAACCTGAAGATTAG

Predicted protein sequences of Glyma06g04490

Limit To All Plant Sequences

>Glyma06g04490.2   sequence type=predicted peptide   gene model=Glyma06g04490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEAGLGDCCSSNTTITRKSEKRKQQHQQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYATPVAAARAYDTAVFHLRGPSARLNFPELLSQDDDVSTQQQGKMSADSIRKKATQVGARVDALQTALQQSSSTHSISSSHVSYEKPDLNEYPKPED*

>Glyma06g04490.3   sequence type=predicted peptide   gene model=Glyma06g04490   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEEAGLGDCCSSNTTITRKSEKRKQQHQQQEKPYRGIRMRKWGKWVAEIREPNKRSRIWLGSYATPVAAARAYDTAVFHLRGPSARLNFPELLSQDDDVSTQQQGKMSADSIRKKATQVGARVDALQTALQQSSSTHSISSSHVSYEKPDLNEYPKPED*

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