Report for Sequence Feature Glyma06g04460
Feature Type: gene_model
Chromosome: Gm06
Start: 3120464
stop: 3125464
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g04460
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G49760 AT
Annotation by Michelle Graham. TAIR10: poly(A) binding protein 8 | chr1:18416740-18419753 FORWARD LENGTH=671
SoyBase E_val: 0 ISS
GO:0006164 GO-bp
Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process
SoyBase N/A ISS
GO:0046686 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to cadmium ion
SoyBase N/A ISS
GO:0005737 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm
SoyBase N/A ISS
GO:0005829 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: cytosol
SoyBase N/A ISS
GO:0003723 GO-mf
Annotation by Michelle Graham. GO Molecular Function: RNA binding
SoyBase N/A ISS
GO:0003743 GO-mf
Annotation by Michelle Graham. GO Molecular Function: translation initiation factor activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
KOG0123
KOG
Polyadenylate-binding protein (RRM superfamily)
JGI ISS
PTHR24011 Panther
FAMILY NOT NAMED
JGI ISS
PTHR24011:SF69 Panther
SUBFAMILY NOT NAMED
JGI ISS
PF00076 PFAM
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
JGI ISS
PF00658 PFAM
Poly-adenylate binding protein, unique domain
JGI ISS
UniRef100_I1K813 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K813_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q00M91 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Poly(A)-binding protein n=1 Tax=Glycine max RepID=Q00M91_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g04460
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g04460
Paralog Evidence Comments
Glyma04g04300 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g04460 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g041700 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g04460
Coding sequences of Glyma06g04460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g04460.1 sequence type=CDS gene model=Glyma06g04460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCGCATATTCCTCAGACCCCCACCAATGACGCGGCGGCTTCTGGTGCAAATCCGTCGATGACGACCATCTCGTTGTACGTCGGGGATCTTGACCACGACGTCAACGATCCGCAGCTCTATGATCTCTTCAACCAGGTTGCCCAAGTCGTTTCCGTTCGAATTTGCAGGGACGTGGCCACCCAACAATCCCTTGGTTACGGCTACGTCAATTTCAGCAACGCTCGAGATGCCGCAAAAGCAATTGATGTGCTGAATTTCACTCCGCTAAATGGCAAAACCATTAGAATAATGTACTCTATTCGGGACCCTAGTGCTCGGAAGAGTGGTGCAGCTAATGTTTTCATAAAGAATTTGGACAAGGCAATCGATCACAAGGCTTTGTTTGATACATTTTCGGCTTTTGGGAATATTCTATCTTGCAAGATTGCGACGGATGCTTCTGGCCAGTCTAAAGGCCATGGTTTTGTGCAGTTTGAGAGTGAAGAATCTGCACAAAATGCAATTGACAAGTTAAATGGCATGCTGATCAATGATAAGCAGGTCTATGTGGGTCCTTTCCAGCGGAAGCAGGATAGAGAGAGTGCTCTCAGTGGCACAAAGTTTAATAACGTTTATGTGAAAAACCTGTTTGAGGCAACGACGGAGGCTGACTTGAAGAGCATTTTTGGAGAATATGGAGCTATTACTAGTGCTGTAGTGATGAGAGATGTAGATGGTAAATCAAAAGGTTTTGGTTTTGTCAATTTTGCGAATGTAGAAGATGCTGCTAAAGCTGTGGAGGCTCTAAATGGAAAGAATTTTGATGGTAAGGAGTGGTATGTTGGAAAAGCCCAGAAAAAGTCTGAAAGGGAGCTTGAACTGAAAGAGCGAAATGAGCAGAGTACGAAGGAGACTGTTGATAAATATCATGGTACAAACTTGTATATCAAGAACTTGGATGATAGTGTTGGTGATGAAGAACTCAGGGAACTGTTCTCTGAGTTTGGTACGATAACCTCATGCAAGGTTATGCGAGATCCAAGTGGAATTAGTAGGGGATCTGGATTTGTTGCATTTTCAATTGCTGAGGGAGCAAGTTGGGCTCTTGGTGAGATGAATGGTAAAATGGTTGCTGGCAAACCTCTCTATGTTGCCCTTGCACAGAGAAAAGAAGATAGAAGAGCAAGGTTACAGGCACAATTTTCACAAGCGAGGCCTGTTGCAATAACCCCTAATGTTTCACCTCGAATGCCACTATACCCTCTAGGGGCTCCTGGGATAGGACAACAATTGCTGTATGGGCAAGCAGCTCCAAGCATGATACCTCAAGCTGCATTTGGTTACCAGCAGCATTTTGTTCCTGGAATGAGGCCAGGTGGTGCTCCAAACTTCTATGTTCCACTGGTTCAGCAGGGTCAACAGGGGCAGCGCTCAGGAGGACAACGAGGAGCAGGTCCTATGCAACAGCTCCAGCAGCCACTGCCATTGATGCACCAACAGATGCTTCCAAGGGGACATGTCTACCGATATCCTCCTGGCTCCAATATGCAAAATATTCAACTGGCAGGAGTACCTGGAGGAATGGTCAGTTACGGCATTGGTCAACCAATGCCCACACAGGCCCTGGCCTCGGCCCTTGCCAATGCTACTCCTGAACAGCAGAGGACTATGCTTGGTGAAGCTTTATACCCGTTAGTAGATAAGCTGGAGCATGAAACAGCAGCAAAGGTTACTGGTATGCTTTTAGAGATGGATCAACCCGAGGTATTACATCTGATTGAGTCACCAGATGCTCTTAAGGCAAAAGTTGTTGAGGCCATGGATGTGTTGAGAAAAGTTACACAGCAGCAATCAAACAGCCCAGCCGATCAACTGGCTTCACTCTCTCTGAATGATAATGTCGAGTCTTAG
Predicted protein sequences of Glyma06g04460
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g04460.1 sequence type=predicted peptide gene model=Glyma06g04460 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAHIPQTPTNDAAASGANPSMTTISLYVGDLDHDVNDPQLYDLFNQVAQVVSVRICRDVATQQSLGYGYVNFSNARDAAKAIDVLNFTPLNGKTIRIMYSIRDPSARKSGAANVFIKNLDKAIDHKALFDTFSAFGNILSCKIATDASGQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVYVGPFQRKQDRESALSGTKFNNVYVKNLFEATTEADLKSIFGEYGAITSAVVMRDVDGKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKERNEQSTKETVDKYHGTNLYIKNLDDSVGDEELRELFSEFGTITSCKVMRDPSGISRGSGFVAFSIAEGASWALGEMNGKMVAGKPLYVALAQRKEDRRARLQAQFSQARPVAITPNVSPRMPLYPLGAPGIGQQLLYGQAAPSMIPQAAFGYQQHFVPGMRPGGAPNFYVPLVQQGQQGQRSGGQRGAGPMQQLQQPLPLMHQQMLPRGHVYRYPPGSNMQNIQLAGVPGGMVSYGIGQPMPTQALASALANATPEQQRTMLGEALYPLVDKLEHETAAKVTGMLLEMDQPEVLHLIESPDALKAKVVEAMDVLRKVTQQQSNSPADQLASLSLNDNVES*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
