Glyma06g04390 - SoyBase

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Report for Sequence Feature Glyma06g04390

Feature Type:	gene_model
Chromosome:	Gm06
Start:	3057339
stop:	3058961
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04390

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G46264	AT	Annotation by Michelle Graham. TAIR10: heat shock transcription factor B4 \| chr1:17224904-17226183 FORWARD LENGTH=348	SoyBase	E_val: 8.00E-123	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0008356	GO-bp	Annotation by Michelle Graham. GO Biological Process: asymmetric cell division	SoyBase	N/A	ISS
GO:0009408	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to heat	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
KOG0627	KOG	Heat shock transcription factor	JGI		ISS
PTHR10015	Panther	HEAT SHOCK TRANSCRIPTION FACTOR	JGI		ISS
PTHR10015:SF7	Panther	HEAT SHOCK TRANSCRIPTION FACTOR	JGI		ISS
PF00447	PFAM	HSF-type DNA-binding	JGI		ISS
UniRef100_Q00M68	UniRef	Annotation by Michelle Graham. Best UniRef hit: Heat shock transcription factor (HSF) n=1 Tax=Glycine max RepID=Q00M68_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q00M68	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Heat shock transcription factor (HSF) n=1 Tax=Glycine max RepID=Q00M68_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g04390

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04390

Paralog	Evidence	Comments
Glyma04g04200	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04390 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g040900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04390

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g04390

Limit To All Plant Sequences

>Glyma06g04390.1   sequence type=CDS   gene model=Glyma06g04390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTCTTCTTCTAGACAACTGTGAAGGCATTTTACTCTCTTTGGACTCACACAAATCAGTGCCAGCTCCTTTCCTCACCAAAACATACCAACTGGTGGATGATCCCGCCACAGATCACATTGTGTCTTGGGGCGAAGACGACACCACCTTCGTCGTTTGGCGTCCTCCTGAGTTCGCAAGAGACCTTCTTCCTAACTACTTCAAACACAACAACTTCTCAAGCTTCGTTCGCCAGCTCAACACCTATGGTTTTAGAAAGATTGTGCCAGACCGATGGGAGTTCGCCAACGAATTCTTCAAGAAGGGAGAGAAACACTTGCTGTGCGAGATCCATAGAAGAAAAACCGCTCAGCCTCAACAAGGAAGCATGAACCACCATCACCACCATTCTCATTCTCCCTTAGGAGTCAACGTTAGCGTCCCAACTTTCTTTCCCTTCTCCAGCAGAGTCAGCATCTCTCCCTCCAACGACTCCGACGACCAAGCCAATTGGTGCGACTCGCCGCCACGTGGATCCACCTCATTGGTGAACGGTGCAGCAGCAGCAGCCAACTACAACACTTCCGTCACGGCGCTTTCGGAGGACAACGAGAGACTCAGAAGAAGCAACAACATGCTCATGTCAGAACTCGCACACATGAAGAAGCTCTACAATGACATCATCTACTTCGTTCAGAACCATGTCAAGCCAGTGGCTCCAAGCAACTCTTACTCTTCTTCTTTGCTACTATGCAATACACCTTCTGCCACTCCAATAACTAGTGGCGGCAATGTTTCAATGACGCAAAGGCCAACGAACCAGCTTCTGGGCTATTATTCTACTAACCCTAAGCAAGGAGCTACACAAATAACTCAACCTCAGACCTATGTTGTGAACTCTCCCACCAACACATCAAGGAGTTCTATAACCATTGTTGAAGGGCCTAACAGCAACATTAACAGCTGCAAGACCAAACTTTTTGGGGTGTCGCTGCAGTCCAAGAAAAGGGTGCACCCGGATTATGGATCTAATCCAGAGACCAACAAGGCTCGTTTGGTTTTGGAAAAGGATGACTTGGGCTTGAATCTCATGCCTCCATCCACTTGTTAG

Predicted protein sequences of Glyma06g04390

Limit To All Plant Sequences

>Glyma06g04390.1   sequence type=predicted peptide   gene model=Glyma06g04390   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MALLLDNCEGILLSLDSHKSVPAPFLTKTYQLVDDPATDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDRWEFANEFFKKGEKHLLCEIHRRKTAQPQQGSMNHHHHHSHSPLGVNVSVPTFFPFSSRVSISPSNDSDDQANWCDSPPRGSTSLVNGAAAAANYNTSVTALSEDNERLRRSNNMLMSELAHMKKLYNDIIYFVQNHVKPVAPSNSYSSSLLLCNTPSATPITSGGNVSMTQRPTNQLLGYYSTNPKQGATQITQPQTYVVNSPTNTSRSSITIVEGPNSNINSCKTKLFGVSLQSKKRVHPDYGSNPETNKARLVLEKDDLGLNLMPPSTC*

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