Report for Sequence Feature Glyma06g04360
Feature Type: gene_model
Chromosome: Gm06
Start: 3020290
stop: 3025826
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g04360
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT5G42920 AT
Annotation by Michelle Graham. TAIR10: THO complex, subunit 5 | chr5:17206310-17209522 REVERSE LENGTH=819
SoyBase E_val: 0 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
KOG2216
KOG
Conserved coiled/coiled coil protein
JGI ISS
PTHR13375 Panther
FMS INTERACTING PROTEIN
JGI ISS
PF09766 PFAM
Fms-interacting protein
JGI ISS
UniRef100_I1K802 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=I1K802_SOYBN
SoyBase E_val: 0 ISS
UniRef100_Q00M79 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Expressed protein-like protein n=1 Tax=Glycine max RepID=Q00M79_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g04360
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE
Paralogs of Glyma06g04360
Paralog Evidence Comments
Glyma04g04180 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g04360 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g040600 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g04360
Transcripts of Glyma06g04360
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g04360.2 sequence type=transcript gene model=Glyma06g04360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
CTCAATTTAGATTCAATGCATTGTGTTTAAATTAAAAGGTGGGAAGCGGAACAAAAGGGGTTTAGGTCAAGGTTGTGACAGGGAAGAGAATCAATGGAAGACGGTGAGATTGAAGAGGGATCAATTGGCGGTGTAGAGGAAGAGGAGCAATCTCCAGAACCGCACAAGTCGGAGGAATCTCCCTACGAAATGTTGCGCAACAGCAAGGCTTCCGTGGAGAGCATCGTCGCCGATATGCTCTCCATTAAAAAAGAGGGTAAACCCAAGCAACTCCTTCGAGATCTCGTTACTCAAATGTTCCTACATTTCATCACCCTCCGTCAGGCTAATCGCAGTATTTTGCTGGAGGAAGACCGCGTGAAAACCGAAACGGAGCGTGCCAAGGCGCCGGTGGATTTCACCACGCTGCAGCTTCACAACCTCATGTACGAGAAAAGCCACTACGTTAAGGCGATCAAGGCCTGCAATGACTTCAAGTCCAAATATCCTGACATTGACCTTGTTCCTGAGGAGGACTTTTTCCGCGACGCTCCTCAAGATATCCAGGACTCCGTCTTGTCGAACGATGCCGCGCACAATCTCATGCTCAGAAGGCTCAATTTCGAGCTATTCCAGCGCAAAGAACTCTGTAAACTTCATGAGAAATTGGAACAGCAAAAGAAAATCCTTTTGGAGACTATTGCAAACAGAAAGAAATTCCTGACCAGTCTCCCTTCACATCTGAAGTCTCTTAAGAAAGCCTCTTTGCCTGTACAAAACCAGCTAGGACTTCATCATACAAAGAAATTAAAGCAGCATCATTCAGCAGAGTTGCTTCCTCCAGGTCTTTATGTGATTTACTCACAGCTGTTGGCTCAAAAGGAGGCCTTTGGGGAACCCATTGATCTGGAGATTATAGGAAGCCTGAAGGATGCTCAAGCTTTTGCTCGTCAACAAGCTCACAAGGACACTGACATTTCCACTACCATGGAGAGTTCCAAATTGGAAGATGATGCTCCTGATGAAGAAGAAGATGGTCAGAGGCGGAGAAAAAGGCCAAGGAGGGTTCAAACCAAGGAGAGCCTTGACCAGGGGGGATTATATCAAGTTCACCCACTAAAAATCGTTATCCATGTGTATGAAGATGAGGCTTCTGGCCCTAAATCTGCAAAACTCATTACTCTAAGGTTTGAGTACTTGGTGAAGTTGAATGTTGTATGTGTTGGAATAGAAGGATCTAATGATGGTCCAGAGAATGACATCTTATGCAATTTATTCCCTAATGATACGGGACTTGAGCTTCCTCACCAGTCAGCCAAACTCTTTGTTCAAGATGCTATAACATTCAATACTCAAAGAACTTCACGTCCTTACAAATGGGCTCAGCACCTGGCAGGGATTGATTTCTTGCCTGAGGTGTCTCGTTTGCTTCTTACCGACAACAGTGGAGCAGTCAAGAATGAAAATGTTATATCTGGTCTTTCACTATATCGCCAGCAGAACCGAGTACCAACAGTTCTGCAGAGAATTCGTGCAAGAAGAAAAGCTCAATTGGCCCTTCTGGAACAGCTAGAATCTCTCACTAAGCTTGAGTGGCCTCGTCTGCCCTGCAAAAGTGTTCCATGGGCTTTACACACTCCTTTGTGCAATTTGGGCAGTTGGTCACCTGTAAGACTTCCACCTGTACTTAGAGAGTCCTCATCTCCTGCTGTCATAGATAAAGAGGAGCATATTCAGGAGCCAATGGATGCTGATGTAATCGAACGATCTGGTGCCACAAAAGCAGAACCACAGAGTATAACAGAAGATGGGGAGCTTCCAACTTTGCTTCCTAAAGTGTCTAAGCTTGACCTTTCCGCACAACTGAACTTAATTTCAAAAAGTATCATTCCCCCGCTCAATAAAATCAGGTCACAAAGTTTCAAAAAGATTGATGATAGTTCTGATTTCTTGCTGGATATTGAAAGTGATATTGATGAGCCAGCTCAGATTGAACAAGAACATGAAAAATCCAATTACCATGCCAGAAAGTCTGGTTCATGGATGAATTACGGGCTCAAGGAATTTCGCTTAGTTCTTTGCAGAAAAATCAGTGCAGATGAGAGCAAATTGAATTTAGAAGCCAAGATCAAGATCAGTATGGAATATCCTCTAAGGCCTCCTCTTTTTGCATTGAGCATTAGTTGTATATCTTCTGGGGAAAACCATGATGAGACAGGTTTGGAGTGGTACAATGAACTTCGTGCAATGGAAGCAGCTGTGAGTAAACTCAAGATGTTATTGCAGTAAAATTTAGCTTCTTAGAACCACAGGTCACTATATGTTCGTGATAGAAAATTGTGACCCAACTCTACATCATGCACATGTTACCTATTTACTTGATTTTCTCCTACTCATGGTGCCTATTTGTGCTTCCCTTTCTAAATTGCAGGTCAATCTACACATACTAAAGATGTTACTTGTCAATCAACAAAATTATGTATTGGCTCATCAAGTGAATTGTCTTGCTATGTTGTTCGACTATTATTTGGACGAGGCATCCCCATCATCTGAAAGGACAAATTGTACTTCCGTGGTTGATATTGGCTTATGCAAGCCTGTTACTGGTAGATTCCTGGGTAGATCTTTTAGAGGAAGGGATCGCAGGAAGATGATCTCCTGGAAAGACATGAAACTTAATTCCAGCTGTCCCTAATAGTGGTAGGTTCCTGTCTGAATCTTTCAGAGGGGGAAGGATCACAATTGATCTCATGTGAAGACAAAATTGTCTTAAGTAGTAATGTTCAGCTCTGGAGGGTTGGCAAATGGATGCTATGGTATATGGTATGGCAAGGATAATGACATTGTACCTCTGTAGTATGCGTTGAGCCAACCATGTGACATCATTGTTCTTGACTCTACAACCAAAAAACTGGCTGGGATACTATGATAGATTTTGAAGGGATCATTTCAGCTGTTGAGTGTTTGTTATTGTGATTTAATTTCTTATTTCTGCCAAATGCAGCTAGTTCGGTTCCAGTATAGGAGTAGGCATCGTGGGTGGAATTTTTTAAGAGTTGTACTTTACCGAGGTCTCTGCATAGTGATTGTTTGTAGATCTGTATTTTCTTTTATTGGTTATAGATAATTCTTTCTATTCTGAATCCGAGATTTCCTGTCAGTGGAATTTTTAAGAATAGGCAAAATTGTATTTTTGGTCCCCTAATTGTCTCCAATTTTGATTTTAGTCCTCCTTTAAATTTATTCACGAATTTAATCTTTCAATTATGTCAAATTCTGTAAATGTGATTTCTAAATCCAAATTTGAACGTTGACGGTCACAAAGAAATGTGACTATCACATGTTACATGCTGGACATAAAAATGTGCGTTCAAAAGTCAATTCTAACATTTTTTTATTCATCGTCTAATTAGAACGTGACATGTGACAACTACGTTTCTTTGTGACAGTCAACGTTTAAATCTGGACTTGGGTATTATATTTATAGAATTTGATATAATTAGAAGACTAAATTCGTGAATAAATTTAAATGGGGACTAAAATCAAAATTAG
Coding sequences of Glyma06g04360
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g04360.1 sequence type=CDS gene model=Glyma06g04360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGACGGTGAGATTGAAGAGGGATCAATTGGCGGTGTAGAGGAAGAGGAGCAATCTCCAGAACCGCACAAGTCGGAGGAATCTCCCTACGAAATGTTGCGCAACAGCAAGGCTTCCGTGGAGAGCATCGTCGCCGATATGCTCTCCATTAAAAAAGAGGGTAAACCCAAGCAACTCCTTCGAGATCTCGTTACTCAAATGTTCCTACATTTCATCACCCTCCGTCAGGCTAATCGCAGTATTTTGCTGGAGGAAGACCGCGTGAAAACCGAAACGGAGCGTGCCAAGGCGCCGGTGGATTTCACCACGCTGCAGCTTCACAACCTCATGTACGAGAAAAGCCACTACGTTAAGGCGATCAAGGCCTGCAATGACTTCAAGTCCAAATATCCTGACATTGACCTTGTTCCTGAGGAGGACTTTTTCCGCGACGCTCCTCAAGATATCCAGGACTCCGTCTTGTCGAACGATGCCGCGCACAATCTCATGCTCAGAAGGCTCAATTTCGAGCTATTCCAGCGCAAAGAACTCTGTAAACTTCATGAGAAATTGGAACAGCAAAAGAAAATCCTTTTGGAGACTATTGCAAACAGAAAGAAATTCCTGACCAGTCTCCCTTCACATCTGAAGTCTCTTAAGAAAGCCTCTTTGCCTGTACAAAACCAGCTAGGACTTCATCATACAAAGAAATTAAAGCAGCATCATTCAGCAGAGTTGCTTCCTCCAGGTCTTTATGTGATTTACTCACAGCTGTTGGCTCAAAAGGAGGCCTTTGGGGAACCCATTGATCTGGAGATTATAGGAAGCCTGAAGGATGCTCAAGCTTTTGCTCGTCAACAAGCTCACAAGGACACTGACATTTCCACTACCATGGAGAGTTCCAAATTGGAAGATGATGCTCCTGATGAAGAAGAAGATGGTCAGAGGCGGAGAAAAAGGCCAAGGAGGGTTCAAACCAAGGAGAGCCTTGACCAGGGGGGATTATATCAAGTTCACCCACTAAAAATCGTTATCCATGTGTATGAAGATGAGGCTTCTGGCCCTAAATCTGCAAAACTCATTACTCTAAGGTTTGAGTACTTGGTGAAGTTGAATGTTGTATGTGTTGGAATAGAAGGATCTAATGATGGTCCAGAGAATGACATCTTATGCAATTTATTCCCTAATGATACGGGACTTGAGCTTCCTCACCAGTCAGCCAAACTCTTTGTTCAAGATGCTATAACATTCAATACTCAAAGAACTTCACGTCCTTACAAATGGGCTCAGCACCTGGCAGGGATTGATTTCTTGCCTGAGGTGTCTCGTTTGCTTCTTACCGACAACAGTGGAGCAGTCAAGAATGAAAATGTTATATCTGGTCTTTCACTATATCGCCAGCAGAACCGAGTACCAACAGTTCTGCAGAGAATTCGTGCAAGAAGAAAAGCTCAATTGGCCCTTCTGGAACAGCTAGAATCTCTCACTAAGCTTGAGTGGCCTCGTCTGCCCTGCAAAAGTGTTCCATGGGCTTTACACACTCCTTTGTGCAATTTGGGCAGTTGGTCACCTGTAAGACTTCCACCTGTACTTAGAGAGTCCTCATCTCCTGCTGTCATAGATAAAGAGGAGCATATTCAGGAGCCAATGGATGCTGATGTAATCGAACGATCTGGTGCCACAAAAGCAGAACCACAGAGTATAACAGAAGATGGGGAGCTTCCAACTTTGCTTCCTAAAGTGTCTAAGCTTGACCTTTCCGCACAACTGAACTTAATTTCAAAAAGTATCATTCCCCCGCTCAATAAAATCAGGTCACAAAGTTTCAAAAAGATTGATGATAGTTCTGATTTCTTGCTGGATATTGAAAGTGATATTGATGAGCCAGCTCAGATTGAACAAGAACATGAAAAATCCAATTACCATGCCAGAAAGTCTGGTTCATGGATGAATTACGGGCTCAAGGAATTTCGCTTAGTTCTTTGCAGAAAAATCAGTGCAGATGAGAGCAAATTGAATTTAGAAGCCAAGATCAAGATCAGTATGGAATATCCTCTAAGGCCTCCTCTTTTTGCATTGAGCATTAGTTGTATATCTTCTGGGGAAAACCATGATGAGACAGGTTTGGAGTGGTACAATGAACTTCGTGCAATGGAAGCAGCTGTCAATCTACACATACTAAAGATGTTACTTGTCAATCAACAAAATTATGTATTGGCTCATCAAGTGAATTGTCTTGCTATGTTGTTCGACTATTATTTGGACGAGGCATCCCCATCATCTGAAAGGACAAATTGTACTTCCGTGGTTGATATTGGCTTATGCAAGCCTGTTACTGGTAGATTCCTGGGTAGATCTTTTAGAGGAAGGGATCGCAGGAAGATGATCTCCTGGAAAGACATGAAACTTAATTCCAGCTGTCCCTAA
>Glyma06g04360.2 sequence type=CDS gene model=Glyma06g04360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGAAGACGGTGAGATTGAAGAGGGATCAATTGGCGGTGTAGAGGAAGAGGAGCAATCTCCAGAACCGCACAAGTCGGAGGAATCTCCCTACGAAATGTTGCGCAACAGCAAGGCTTCCGTGGAGAGCATCGTCGCCGATATGCTCTCCATTAAAAAAGAGGGTAAACCCAAGCAACTCCTTCGAGATCTCGTTACTCAAATGTTCCTACATTTCATCACCCTCCGTCAGGCTAATCGCAGTATTTTGCTGGAGGAAGACCGCGTGAAAACCGAAACGGAGCGTGCCAAGGCGCCGGTGGATTTCACCACGCTGCAGCTTCACAACCTCATGTACGAGAAAAGCCACTACGTTAAGGCGATCAAGGCCTGCAATGACTTCAAGTCCAAATATCCTGACATTGACCTTGTTCCTGAGGAGGACTTTTTCCGCGACGCTCCTCAAGATATCCAGGACTCCGTCTTGTCGAACGATGCCGCGCACAATCTCATGCTCAGAAGGCTCAATTTCGAGCTATTCCAGCGCAAAGAACTCTGTAAACTTCATGAGAAATTGGAACAGCAAAAGAAAATCCTTTTGGAGACTATTGCAAACAGAAAGAAATTCCTGACCAGTCTCCCTTCACATCTGAAGTCTCTTAAGAAAGCCTCTTTGCCTGTACAAAACCAGCTAGGACTTCATCATACAAAGAAATTAAAGCAGCATCATTCAGCAGAGTTGCTTCCTCCAGGTCTTTATGTGATTTACTCACAGCTGTTGGCTCAAAAGGAGGCCTTTGGGGAACCCATTGATCTGGAGATTATAGGAAGCCTGAAGGATGCTCAAGCTTTTGCTCGTCAACAAGCTCACAAGGACACTGACATTTCCACTACCATGGAGAGTTCCAAATTGGAAGATGATGCTCCTGATGAAGAAGAAGATGGTCAGAGGCGGAGAAAAAGGCCAAGGAGGGTTCAAACCAAGGAGAGCCTTGACCAGGGGGGATTATATCAAGTTCACCCACTAAAAATCGTTATCCATGTGTATGAAGATGAGGCTTCTGGCCCTAAATCTGCAAAACTCATTACTCTAAGGTTTGAGTACTTGGTGAAGTTGAATGTTGTATGTGTTGGAATAGAAGGATCTAATGATGGTCCAGAGAATGACATCTTATGCAATTTATTCCCTAATGATACGGGACTTGAGCTTCCTCACCAGTCAGCCAAACTCTTTGTTCAAGATGCTATAACATTCAATACTCAAAGAACTTCACGTCCTTACAAATGGGCTCAGCACCTGGCAGGGATTGATTTCTTGCCTGAGGTGTCTCGTTTGCTTCTTACCGACAACAGTGGAGCAGTCAAGAATGAAAATGTTATATCTGGTCTTTCACTATATCGCCAGCAGAACCGAGTACCAACAGTTCTGCAGAGAATTCGTGCAAGAAGAAAAGCTCAATTGGCCCTTCTGGAACAGCTAGAATCTCTCACTAAGCTTGAGTGGCCTCGTCTGCCCTGCAAAAGTGTTCCATGGGCTTTACACACTCCTTTGTGCAATTTGGGCAGTTGGTCACCTGTAAGACTTCCACCTGTACTTAGAGAGTCCTCATCTCCTGCTGTCATAGATAAAGAGGAGCATATTCAGGAGCCAATGGATGCTGATGTAATCGAACGATCTGGTGCCACAAAAGCAGAACCACAGAGTATAACAGAAGATGGGGAGCTTCCAACTTTGCTTCCTAAAGTGTCTAAGCTTGACCTTTCCGCACAACTGAACTTAATTTCAAAAAGTATCATTCCCCCGCTCAATAAAATCAGGTCACAAAGTTTCAAAAAGATTGATGATAGTTCTGATTTCTTGCTGGATATTGAAAGTGATATTGATGAGCCAGCTCAGATTGAACAAGAACATGAAAAATCCAATTACCATGCCAGAAAGTCTGGTTCATGGATGAATTACGGGCTCAAGGAATTTCGCTTAGTTCTTTGCAGAAAAATCAGTGCAGATGAGAGCAAATTGAATTTAGAAGCCAAGATCAAGATCAGTATGGAATATCCTCTAAGGCCTCCTCTTTTTGCATTGAGCATTAGTTGTATATCTTCTGGGGAAAACCATGATGAGACAGGTTTGGAGTGGTACAATGAACTTCGTGCAATGGAAGCAGCTGTGAGTAAACTCAAGATGTTATTGCAGTAA
Predicted protein sequences of Glyma06g04360
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g04360.1 sequence type=predicted peptide gene model=Glyma06g04360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEDGEIEEGSIGGVEEEEQSPEPHKSEESPYEMLRNSKASVESIVADMLSIKKEGKPKQLLRDLVTQMFLHFITLRQANRSILLEEDRVKTETERAKAPVDFTTLQLHNLMYEKSHYVKAIKACNDFKSKYPDIDLVPEEDFFRDAPQDIQDSVLSNDAAHNLMLRRLNFELFQRKELCKLHEKLEQQKKILLETIANRKKFLTSLPSHLKSLKKASLPVQNQLGLHHTKKLKQHHSAELLPPGLYVIYSQLLAQKEAFGEPIDLEIIGSLKDAQAFARQQAHKDTDISTTMESSKLEDDAPDEEEDGQRRRKRPRRVQTKESLDQGGLYQVHPLKIVIHVYEDEASGPKSAKLITLRFEYLVKLNVVCVGIEGSNDGPENDILCNLFPNDTGLELPHQSAKLFVQDAITFNTQRTSRPYKWAQHLAGIDFLPEVSRLLLTDNSGAVKNENVISGLSLYRQQNRVPTVLQRIRARRKAQLALLEQLESLTKLEWPRLPCKSVPWALHTPLCNLGSWSPVRLPPVLRESSSPAVIDKEEHIQEPMDADVIERSGATKAEPQSITEDGELPTLLPKVSKLDLSAQLNLISKSIIPPLNKIRSQSFKKIDDSSDFLLDIESDIDEPAQIEQEHEKSNYHARKSGSWMNYGLKEFRLVLCRKISADESKLNLEAKIKISMEYPLRPPLFALSISCISSGENHDETGLEWYNELRAMEAAVNLHILKMLLVNQQNYVLAHQVNCLAMLFDYYLDEASPSSERTNCTSVVDIGLCKPVTGRFLGRSFRGRDRRKMISWKDMKLNSSCP*
>Glyma06g04360.2 sequence type=predicted peptide gene model=Glyma06g04360 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MEDGEIEEGSIGGVEEEEQSPEPHKSEESPYEMLRNSKASVESIVADMLSIKKEGKPKQLLRDLVTQMFLHFITLRQANRSILLEEDRVKTETERAKAPVDFTTLQLHNLMYEKSHYVKAIKACNDFKSKYPDIDLVPEEDFFRDAPQDIQDSVLSNDAAHNLMLRRLNFELFQRKELCKLHEKLEQQKKILLETIANRKKFLTSLPSHLKSLKKASLPVQNQLGLHHTKKLKQHHSAELLPPGLYVIYSQLLAQKEAFGEPIDLEIIGSLKDAQAFARQQAHKDTDISTTMESSKLEDDAPDEEEDGQRRRKRPRRVQTKESLDQGGLYQVHPLKIVIHVYEDEASGPKSAKLITLRFEYLVKLNVVCVGIEGSNDGPENDILCNLFPNDTGLELPHQSAKLFVQDAITFNTQRTSRPYKWAQHLAGIDFLPEVSRLLLTDNSGAVKNENVISGLSLYRQQNRVPTVLQRIRARRKAQLALLEQLESLTKLEWPRLPCKSVPWALHTPLCNLGSWSPVRLPPVLRESSSPAVIDKEEHIQEPMDADVIERSGATKAEPQSITEDGELPTLLPKVSKLDLSAQLNLISKSIIPPLNKIRSQSFKKIDDSSDFLLDIESDIDEPAQIEQEHEKSNYHARKSGSWMNYGLKEFRLVLCRKISADESKLNLEAKIKISMEYPLRPPLFALSISCISSGENHDETGLEWYNELRAMEAAVSKLKMLLQ*