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Report for Sequence Feature Glyma06g04340

Feature Type:gene_model
Chromosome:Gm06
Start:2998221
stop:3002715
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g04340
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G45230AT Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF3223) | chr1:17169874-17171381 REVERSE LENGTH=219 SoyBaseE_val: 8.00E-70ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
PF11523PFAM Protein of unknown function (DUF3223) JGI ISS
UniRef100_C6T490UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6T490_SOYBN SoyBaseE_val: 3.00E-148ISS
UniRef100_G7J6E2UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein DCL n=1 Tax=Medicago truncatula RepID=G7J6E2_MEDTR SoyBaseE_val: 4.00E-81ISS

Expression Patterns of Glyma06g04340
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04340
ParalogEvidenceComments
Glyma04g04160 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04340 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g040300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g04340
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g04340
>Glyma06g04340.1   sequence type=CDS   gene model=Glyma06g04340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGATTTCAACTTCAAGCATGGCTTTGCTTTCTTTACTACCCAAAACGGCACCGCATGCCCTTTCCCTCACAAACCCTTCCTCTTCCACTCCCCTCATCTTACCTTTCAGTTTCCAATGTTTGCCTCACCCTCTTCCTTCTCCTCTCTCTTCCCTCAAAGCTACTTTTTCCGACGGTGGCGACAATTTGCGCGGCAAGCCCCTGGTTCCTCAGGCCTTTGAAGAAGAAGACGACGACGACGACAACAAATGGGTTGACTGGGAGGACCTGATTTTGGAGGACACCGTTCCTCTCGTTGGCTTCGTCAGAATGATTCTTCATTCTGGACAATATGACAATGGAGATAAACTAAGTCCAGAGCATGAGAAAACCATTATTGAGAAGCTGCTTCCCTTTCATCCAGAATTTGAGAAAAAGATCGGAAGTGGAGTTGACTATATCACGATTGGATATCATCCTGATTTCGAACGCTCTAGGTGTTTGTTCATAGTACGACAAGATGGAGAGCTGGTTGATTTTTCATATTGGAAATGCATAAAGGGCTTGATCAGAAAGAACTATCCATTATATGCAGACAGTTTCATTCTCAGACATTTCAGGAAGAAGAGTCGTAATTTGTGA
Predicted protein sequences of Glyma06g04340
>Glyma06g04340.1   sequence type=predicted peptide   gene model=Glyma06g04340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MISTSSMALLSLLPKTAPHALSLTNPSSSTPLILPFSFQCLPHPLPSPLSSLKATFSDGGDNLRGKPLVPQAFEEEDDDDDNKWVDWEDLILEDTVPLVGFVRMILHSGQYDNGDKLSPEHEKTIIEKLLPFHPEFEKKIGSGVDYITIGYHPDFERSRCLFIVRQDGELVDFSYWKCIKGLIRKNYPLYADSFILRHFRKKSRNL*






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