SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G33400 | AT | Annotation by Michelle Graham. TAIR10: Vacuolar import/degradation, Vid27-related protein | chr4:16078189-16080410 REVERSE LENGTH=645 | SoyBase | E_val: 0 | ISS |
| GO:0000085 | GO-bp | Annotation by Michelle Graham. GO Biological Process: G2 phase of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0006260 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA replication | SoyBase | N/A | ISS |
| GO:0006275 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of DNA replication | SoyBase | N/A | ISS |
| GO:0006306 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA methylation | SoyBase | N/A | ISS |
| GO:0006342 | GO-bp | Annotation by Michelle Graham. GO Biological Process: chromatin silencing | SoyBase | N/A | ISS |
| GO:0006499 | GO-bp | Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation | SoyBase | N/A | ISS |
| GO:0008283 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell proliferation | SoyBase | N/A | ISS |
| GO:0009640 | GO-bp | Annotation by Michelle Graham. GO Biological Process: photomorphogenesis | SoyBase | N/A | ISS |
| GO:0009909 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of flower development | SoyBase | N/A | ISS |
| GO:0010389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of G2/M transition of mitotic cell cycle | SoyBase | N/A | ISS |
| GO:0016458 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing | SoyBase | N/A | ISS |
| GO:0016567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein ubiquitination | SoyBase | N/A | ISS |
| GO:0016571 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone methylation | SoyBase | N/A | ISS |
| GO:0016572 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone phosphorylation | SoyBase | N/A | ISS |
| GO:0016579 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein deubiquitination | SoyBase | N/A | ISS |
| GO:0031047 | GO-bp | Annotation by Michelle Graham. GO Biological Process: gene silencing by RNA | SoyBase | N/A | ISS |
| GO:0034968 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone lysine methylation | SoyBase | N/A | ISS |
| GO:0045893 | GO-bp | Annotation by Michelle Graham. GO Biological Process: positive regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0051567 | GO-bp | Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0005829 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytosol | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003674 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: molecular function | SoyBase | N/A | ISS |
| KOG2395 | KOG | Protein involved in vacuole import and degradation | JGI | ISS | |
| PF08553 | PFAM | VID27 cytoplasmic protein | JGI | ISS | |
| UniRef100_G7J6D3 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: DEM2 n=1 Tax=Medicago truncatula RepID=G7J6D3_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K7Z6 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7Z6_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g04290 not represented in the dataset |
Glyma06g04290 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g04120 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g039800 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g04290.1 sequence type=CDS gene model=Glyma06g04290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGCCAATCACAGTCGCGAAGATCTCTTGGAATCTTCCGACTCCGAACAAGAGGAGTATGAAACCTTCGAAGACGCCACCGAAGGAAGCGCCGAACGGAAACCGTCAACGCCGTCATCCCTCGATGACGTGGAGGCCAAGCTGAAGGCCCTAAAACTTAAATACTCTTCCTCCTCCTCCGCCCCCGCCGTCAATAACGCCGTCAAGCTCTACGTCCACATTGGCGGCAACACCCCCAAAGCCAAATGGGTAACTTCTGATAAACTCACATCTTATTCTTTCGTGAAAACCCACTCCGACGCCGATACCGACGAAGAAATCGACAACAACGACGACTCCGACAACGACAACGACAATGACGACTACGACGAATCAAACGAAAAGCCTTTCTGGGTTTTAAAAGTTGGTTCCAAAATCCGATCCAAGGTGGGCCCGGAGATGGGCCTGAAGAGCTTCCCCGAGCAGCGGCGCGTGGACTTCGTGGTGCGTGGCGTCTGGGCGATGAAGTTCTTCAGCGACCAAGACCAGATCGACTTCATCGATTCCTTCCAGAAGTGTCTCTTCGAGAACACGCACGGCGTCGAGGCCACGGAGGCCAACAAACTCAAAATCTACGGCAAGGATTTCGCGGCGTGGGCAAAACCCGAAACCGCCGATGATTCCATGTGGGAGGACGCAGAGGAAGCCTTCACCAAAAGCCCCACACTGGTTAGGTCAAACCAAGACCTAAAAGAAGAGTTCGAAGAAGCTTCCAACGGTGGAATTCAGAGCCTTGCTTTGGGTGCTTTGGACAACAGTTTCTTGGTGAGTGATAATGGGATTCAGGTTGTGAAGAATTTCGCACATGGGATTCATGGGAAGGGTGCTTTTGTGAATTTCAGTGATGGGTATCAAAAAGGGGGTGGTGGTTCTTCCTATTGTACCCCTAAGAAGACACTTCTGATGAGGGCTGAGACCAACATGCTTCTGATGAGTCCAATGGGTGGAGGGAAGCTTCACTCCACTGGGCTTCATCAGCTTGATATTGAGACTGGGAAGGTTGTGAGTGAATGGATGTTTGGGAAGGATGGGACTGAGATTACAATGAGGGATATTACAAATGATAGTAAAGGGGCTCAATTGGATCCTTCTGGGTCAACTTTTCTAGGGTTGGATGATAACAGGCTTTGTAGGTGGGATATGAGGGATCGTAATGGGATGGTTCAGAACTTGGATGATTCCAATGCCCCCGTGTTGAATTGGGCACAAGGGCATCAGTTTTCGAGGGGGACTAACTTCCAGTGCTTTGCTACTACTGGTGATGGGTCCATTGTTGTGGGGTCTTTGGATGGGAAGATAAGGCTGTATTCGGTGAACACGATGAGGCAGGCGAAGACGGCTTTTCCTGGCCTTGGTTCGCCGGTTACTCATGTGGATGTAACCTTTGATGGAAAGTGGATTGTGGGTACTACTGATTCCTACTTGATTCTTATCTGTACCCTCTTTACTGACAAAAATGGAACAACAAAGACTGGTTTTTCTGGTCGGATGGGGAATAGGATTGCTGCTCCCAGGTTGCTCAAGCTCAACCCTCTTGATTCACATTTGGCTGGAGCGAATAATAAGTTCCGCAATGCTCAGTTTTCGTGGGTGACAGAGAATGGGAAACAGGAGCGACATATAGTAGCCACCGTGGGGAAGTTCAGTGTGATATGGAACTTCCAACAAGTCAAGGATGGTTCTCATGAGTGCTACCGTAACCAACAGGGTCTAAAGAGCTGCTTCTGCTACAAGATAGTCCTTAGGGATGATTCCATTGTTGAGAGCCGATTTATGCATGACAAGTTTGCAGTCACTGATTCTCCTGAGGCTCCATTGGTCATAGCTACCCCAATGAAAGTTAGCTCATTCAGCATATCCAGCAAGCGATGA
>Glyma06g04290.1 sequence type=predicted peptide gene model=Glyma06g04290 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGANHSREDLLESSDSEQEEYETFEDATEGSAERKPSTPSSLDDVEAKLKALKLKYSSSSSAPAVNNAVKLYVHIGGNTPKAKWVTSDKLTSYSFVKTHSDADTDEEIDNNDDSDNDNDNDDYDESNEKPFWVLKVGSKIRSKVGPEMGLKSFPEQRRVDFVVRGVWAMKFFSDQDQIDFIDSFQKCLFENTHGVEATEANKLKIYGKDFAAWAKPETADDSMWEDAEEAFTKSPTLVRSNQDLKEEFEEASNGGIQSLALGALDNSFLVSDNGIQVVKNFAHGIHGKGAFVNFSDGYQKGGGGSSYCTPKKTLLMRAETNMLLMSPMGGGKLHSTGLHQLDIETGKVVSEWMFGKDGTEITMRDITNDSKGAQLDPSGSTFLGLDDNRLCRWDMRDRNGMVQNLDDSNAPVLNWAQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSVNTMRQAKTAFPGLGSPVTHVDVTFDGKWIVGTTDSYLILICTLFTDKNGTTKTGFSGRMGNRIAAPRLLKLNPLDSHLAGANNKFRNAQFSWVTENGKQERHIVATVGKFSVIWNFQQVKDGSHECYRNQQGLKSCFCYKIVLRDDSIVESRFMHDKFAVTDSPEAPLVIATPMKVSSFSISSKR*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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