Glyma06g04220 - SoyBase

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Report for Sequence Feature Glyma06g04220

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2936167
stop:	2937567
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04220

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G42750	AT	Annotation by Michelle Graham. TAIR10: BRI1 kinase inhibitor 1 \| chr5:17143028-17144041 REVERSE LENGTH=337	SoyBase	E_val: 3.00E-35	ISS
GO:0010423	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of brassinosteroid biosynthetic process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0005515	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein binding	SoyBase	N/A	ISS
GO:0046982	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity	SoyBase	N/A	ISS
UniRef100_G7I3N4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BRI1-KD interacting protein n=1 Tax=Medicago truncatula RepID=G7I3N4_MEDTR	SoyBase	E_val: 2.00E-62	ISS
UniRef100_I1K7Y9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7Y9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g04220

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04220

Paralog	Evidence	Comments
Glyma04g04050	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04220 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g039100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04220

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g04220

Limit To All Plant Sequences

>Glyma06g04220.1   sequence type=CDS   gene model=Glyma06g04220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAACACATCATCAACCCCAAAAGAACAAAGAAAACGATGTGCAAAAGAAAACTGAAGAAGGAGTAGTAGCAAAGCCACCTTCACCATCCTCTTCCCCTTCTCACGAATTCTCCTTCACAATCTCTCTCCACTCTACTTCTAACACCACAATCCAAGACAAATCCAAAACCCCACCTTCTCTTGCAGTTGATCTATCTCCAGCAGATGACATTTTCTTCCATGGTCACTTGCTTCCTCTACACCTCTTATCTCACTTCTCTTCTTCACCTCGCTTTTCCACCAACTCCGTGGACAGTTTCACACTCCCCATCAGAGAGTTCTTAGAAGATGAAAAACGCAACAGCAGCAACAGGAGCAACATCACCATAGATAGCATTACCAGCTGCAACAACAAAGATGACTACTACAACAATAGAGTCACAAAGGAAGAAAGTAAGTCCAAGCCTAGTTTCTCATTGTTTGGTTTATCAAAGGGGCGTAAAGGGTGTCAAGTTAGAGATAACAAAGAAGATAAAGAGGATAACATTAAGCACAAGAAGAAACTAGGGTATGATGTGATGCATGCACTAAAGAAGTACTTGAGAATGGTGCAGCCACTAGTGCTTTTCAGAGGGAGAAGAGAAAAGGGTCGGTTCCATGGACAAGCTTATTCTCATTCGGGGAATTTGATTAGGAAAAACAAGCCTGAAGTGAGAGGAAGAAGAGGTGAGTATTCAGCACCAGCTTCTATGAGAACTTCTCCAACAAACAGTGGTCTTCTTCTTGCAACTACTGCTCTTCCTCCTGCGAATGACAGCACCATGGAAGAGTTGCAAGCGGCCATTCAAGCTGCAATTGCTCACTGCAAAAATTCTATTGCCAAAGAAGAGAAGCTCAGTTGCTGA

Predicted protein sequences of Glyma06g04220

Limit To All Plant Sequences

>Glyma06g04220.1   sequence type=predicted peptide   gene model=Glyma06g04220   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
METHHQPQKNKENDVQKKTEEGVVAKPPSPSSSPSHEFSFTISLHSTSNTTIQDKSKTPPSLAVDLSPADDIFFHGHLLPLHLLSHFSSSPRFSTNSVDSFTLPIREFLEDEKRNSSNRSNITIDSITSCNNKDDYYNNRVTKEESKSKPSFSLFGLSKGRKGCQVRDNKEDKEDNIKHKKKLGYDVMHALKKYLRMVQPLVLFRGRREKGRFHGQAYSHSGNLIRKNKPEVRGRRGEYSAPASMRTSPTNSGLLLATTALPPANDSTMEELQAAIQAAIAHCKNSIAKEEKLSC*

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