Glyma06g04210 - SoyBase

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Report for Sequence Feature Glyma06g04210

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2922389
stop:	2927457
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47380	AT	Annotation by Michelle Graham. TAIR10: Protein phosphatase 2C family protein \| chr1:17373004-17375305 REVERSE LENGTH=428	SoyBase	E_val: 0	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0004722	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine phosphatase activity	SoyBase	N/A	ISS
KOG0698	KOG	Serine/threonine protein phosphatase	JGI		ISS
PTHR13832	Panther	PROTEIN PHOSPHATASE 2C	JGI		ISS
PTHR13832:SF25	Panther	gb def: serine-threonine phosophatase 2c [toxoplasma gondii]	JGI		ISS
PF00481	PFAM	Protein phosphatase 2C	JGI		ISS
UniRef100_E4MXN4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: mRNA, clone: RTFL01-28-G13 n=1 Tax=Eutrema halophilum RepID=E4MXN4_THEHA	SoyBase	E_val: 0	ISS
UniRef100_I1K7Y8	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7Y8_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g04210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04210

Paralog	Evidence	Comments
Glyma04g04041	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g039000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g04210

Limit To All Plant Sequences

>Glyma06g04210.1   sequence type=CDS   gene model=Glyma06g04210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTCTGCTCGAAGTGAACACCAATCGGTTCCTCTTTCGGTGCTGCTGAAGCGCGAGTTGGCGAATGAGAAAATTGAGAAGCCCGAGGTTGTTATTTTGCACGGCCAAGCTAGTGAGAATAAGAAAGGAGAGGATTTCACGCTATTGAAGACGGAATGCCAAAGGGTGCTTGGAGATGGGGTTTCTACCTATTCTGTTTTTGGGCTATTCGATGGACACAATGGATCTGCTGCCGCTATTTATGCCAAGGAGAATCTTCTAAATAATGTTTTAAGTGCAATTCCTTCTGATCTTAACAGAGATGAGTGGGTAGCAGCGTTGCCTAGGGCTTTGGTTGCAGGCTTTGTAAAAACTGATAAAGATTTTCAAGAGAAAGCACAAACATCAGGAACAACTGTAACCTTTATGATTGTAGAAGGATGGGTTTTAACAGTTGCATCAGTTGGTGATTCCCGTTGCATACTTGAGCCTTCCGAAGGTGGGATTTTTTACTTGTCAGCAGACCATAGACTAGAGAGCAATGAAGAGGAGAGGGTCCGCATCACTTCTAGTGGAGGTGAGGTTGGTCGTCTAAATACAGGAGGAGGCACAGAGGTTGGTCCTTTGAGATGTTGGCCTGGTGGCTTGTGTCTCTCACGATCCATTGGTGATATGGATGTTGGTGAATTTATTGTCCCTGTACCACATGTAAAGCAAGTGAAGCTTTCCACTGCTGGAGGCAGGATTATTCTCAGCAGTGATGGTGTCTGGGATGCTCTAAGTGCAGAAATGGCCCTTGATTGCTGTCGTGGCATGCCACCTGAGGCTGCAGCAACCCATATTGTGAAAGAATCTGTGCAAGCAAAGGGACTTAGAGATGACACAACCTGCATTGTTATTGACATATTACCCCTGGAGAAGCCACCTACTTCTGTGCCAACACAAAAGAAACCGGTGAAAGGAATGCTTAAGTCTATTTTTCGCAAAAAGTCCTCTGAATCATCAACTTTTATTGAAAAAGAATACCTGGAGCCAGATGTGGTACAGGAACTATACGAGGAAGGGTCTGCTATGCTTTCAGAGAGGTTAGAAACAAAATATCCACTTTGCAACATGTTCAAGTTGTTCATCTGTGCAGTGTGTCAGGTAGAGATTAAACCCGGGGAGGGTATTTCCATACATGAGGGTCTGACTAACCCAGGAAGATTGCGTCCCTGGGATGGGCCTTTCCTTTGCTCAAGTTGCCAAGAAAAGAAAGAAGCTATGGAAGGGAAGCGAACATCAGATAGACTTAGCAGCGGGAGTGACTGA

Predicted protein sequences of Glyma06g04210

Limit To All Plant Sequences

>Glyma06g04210.1   sequence type=predicted peptide   gene model=Glyma06g04210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MSARSEHQSVPLSVLLKRELANEKIEKPEVVILHGQASENKKGEDFTLLKTECQRVLGDGVSTYSVFGLFDGHNGSAAAIYAKENLLNNVLSAIPSDLNRDEWVAALPRALVAGFVKTDKDFQEKAQTSGTTVTFMIVEGWVLTVASVGDSRCILEPSEGGIFYLSADHRLESNEEERVRITSSGGEVGRLNTGGGTEVGPLRCWPGGLCLSRSIGDMDVGEFIVPVPHVKQVKLSTAGGRIILSSDGVWDALSAEMALDCCRGMPPEAAATHIVKESVQAKGLRDDTTCIVIDILPLEKPPTSVPTQKKPVKGMLKSIFRKKSSESSTFIEKEYLEPDVVQELYEEGSAMLSERLETKYPLCNMFKLFICAVCQVEIKPGEGISIHEGLTNPGRLRPWDGPFLCSSCQEKKEAMEGKRTSDRLSSGSD*

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