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Report for Sequence Feature Glyma06g04186

Feature Type:gene_model
Chromosome:Gm06
Start:2902851
stop:2909566
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g04186
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G33360AT Annotation by Michelle Graham. TAIR10: NAD(P)-binding Rossmann-fold superfamily protein | chr4:16067989-16069374 REVERSE LENGTH=344 SoyBaseE_val: 6.00E-178ISS
GO:0006721GO-bp Annotation by Michelle Graham. GO Biological Process: terpenoid metabolic process SoyBaseN/AISS
GO:0009627GO-bp Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance SoyBaseN/AISS
GO:0009744GO-bp Annotation by Michelle Graham. GO Biological Process: response to sucrose stimulus SoyBaseN/AISS
GO:0009749GO-bp Annotation by Michelle Graham. GO Biological Process: response to glucose stimulus SoyBaseN/AISS
GO:0009750GO-bp Annotation by Michelle Graham. GO Biological Process: response to fructose stimulus SoyBaseN/AISS
GO:0009788GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of abscisic acid mediated signaling pathway SoyBaseN/AISS
GO:0009853GO-bp Annotation by Michelle Graham. GO Biological Process: photorespiration SoyBaseN/AISS
GO:0016487GO-bp Annotation by Michelle Graham. GO Biological Process: farnesol metabolic process SoyBaseN/AISS
GO:0034976GO-bp Annotation by Michelle Graham. GO Biological Process: response to endoplasmic reticulum stress SoyBaseN/AISS
GO:0044237GO-bp Annotation by Michelle Graham. GO Biological Process: cellular metabolic process SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005773GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuole SoyBaseN/AISS
GO:0005774GO-cc Annotation by Michelle Graham. GO Cellular Compartment: vacuolar membrane SoyBaseN/AISS
GO:0005783GO-cc Annotation by Michelle Graham. GO Cellular Compartment: endoplasmic reticulum SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
GO:0000166GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleotide binding SoyBaseN/AISS
GO:0003824GO-mf Annotation by Michelle Graham. GO Molecular Function: catalytic activity SoyBaseN/AISS
GO:0047886GO-mf Annotation by Michelle Graham. GO Molecular Function: farnesol dehydrogenase activity SoyBaseN/AISS
GO:0050662GO-mf Annotation by Michelle Graham. GO Molecular Function: coenzyme binding SoyBaseN/AISS
KOG1502 KOG Flavonol reductase/cinnamoyl-CoA reductase JGI ISS
PTHR10366Panther NAD DEPENDENT EPIMERASE/DEHYDRATASE JGI ISS
PTHR10366:SF21Panther gb def: putative tdp-glucose dehydratase [streptomyces rochei] JGI ISS
PF01370PFAM NAD dependent epimerase/dehydratase family JGI ISS
PF05705PFAM Eukaryotic protein of unknown function (DUF829) JGI ISS
UniRef100_G7J6B7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Dihydroflavonol-4-reductase n=2 Tax=Medicago truncatula RepID=G7J6B7_MEDTR SoyBaseE_val: 0ISS
UniRef100_I1K7Y4UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7Y4_SOYBN SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g04186
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g04186 not represented in the dataset
Glyma06g04186 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04186
ParalogEvidenceComments
Glyma04g04020 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04186 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments

References for Glyma06g04186
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g04186
>Glyma06g04186.1   sequence type=CDS   gene model=Glyma06g04186   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTGGGGATTTGGTGGTAGATATTATTGGGAAAGAAAAGTGGCTTGTGAAAAAGTCGATGGGATAGTTGTGGTGTTCGCGTGGATGTCAAGCGAGGAGAAGCACTTGATGAAATACGTGGACCTCTATTCCTCTATTGGATGGAATTCACTCGTTTGCCATTCTCAATTTCTCAATATGTTCTTCCCAGAGAAAGCCACAATTCTTGCTGTTGATATTCTTAATGAACTTGTTGAGGTGCTGAAAATCAGGCCTTGCCCCATTGTTTTTGCATCCTTTTCAGGCGGTGCAAAAGCTTGTATGCAGAAGGTTCTTCAGGATGACTACCAGATAGTTAGAGACTGTATTTCTGGCTATATTTATGATTCAAGCCCAGTTGATTTTACCAGTGATTTGGGTGTTCGATTTCTTCTACAACCAAGTGTTTTAAAAGTGTCCCACCCTCCAAGATTTGCTTCATGGATTGCAAATGGCATAGCTTCTGGTCTTGATTCTCTTTTCCTCAGTAGATTTGAATCACAGCGTGCAGAATATTGGTGGACACTTTACTCCACCATTAATATGCAGGTCCCGTATCTCATTTTATGTTCAGAAAATGATAATCTTGCTCCTTTTCAAGTTATTTCAAATTTTTTCCAAAGACTAAAAGACCTTGGTGGAGATGTCAAATTGTTAAAATGGAGTGCTTCTCCTCATGTAGGTCATTTTCGGCATCATCCAATTGATTACAAGGCTGCTATCACTGAGATCCTTGGCAAGGCAGTTGCAATTTATCATTCCAAAAATAGTCGAATTGAAGACGAGAAACAGGGTATAGAAGGAACAAAAGATGAGATCACAGATCCGTTCTCTGAATTGAGGAAAGCAGCAATGTTCTCAACTAGTTTTCAGGGTTTTGCTCTTGCTCCAAGTGATAATTTGTCTTCTAGTTCAACGGAGTATTATGTGGGTAAAGGTGTTGGCACCATAGCAGATGAACGCAAAGGAGGGTTTATTCATCTCCCGAGCCGTCCTAGCATCAATGCAAATGGGGTTCTTGGCCAAATATTGTTTGATGTTTGTGTGCCCAAGAATGTTGAGGATTGGTCAAGGAAAGAAGCAGAGGCTGAGGAAACAATGAAGATATTGGTGACCGGCGCATCCGGTTTCCTCGGTGGAAAACTCTGCGACGCCCTCGTCCGGCAAGGTTACTCTGTCAGGGTTCTCGTAAGATCCACCAGCGATATCTCCGCCCTTTCTCCGCACATCGAAATCTTCTACGGCGACATCACCGACTACGCCTCTCTCCTCGCCGCCTGCTTCTCCTGCACTCTCGTCTTCCACCTTGCCGCCCTCGTCGAACCCTGGCTTCCTGATCCTTCCAAATTCTTCTCCGTCAACGTTGGAGGATTGAAAAACGTGTTGGCGGCGGTGAAGGAGACTCGCACAGTGGAAAAACTCCTGTATACGTCGTCGTTTTTCGCTCTCGGACCAACTGATGGAATCGTCGCCGACGAGAATCAAGTCCATCACGAGAAATATTTCTGTACGGAATATGAGAAATCGAAGGTGGCCGCGGATAAGATTGCGGTGCAAGCTGCGTCGGAGGGGGTGCCAATAGTACTACTGTATCCCGGAGTAATCTATGGGCCTGGCAAGGTCACTGCAGGAAACGTTCTTGCACGAATGATAGTAGAGCGGTTTAGTGGTCGATTGCCTGGTTACGTGGGGTATGGAAACGATAGATTTTCGTTCAGCCATGTGGAGGATGTGGTGGAAGGGCACATTGCAGCAATGAAAAAAGGAGAAGCTGGGAATAGGTATCTACTAACGGGGGAAAATGCGTCCTTCAAGCATGTTTTTGATATGGCTGCTGCGATTACTCATACTAAAAAACCACTGTTCAGCATCCCATTGTGGCTAATTCAACTCTATGGCTGCCTCTCTGTTTTCTTCTCTAGAATCACCGGAATGCTACCTCTCATCAGTCCACCGACAGTACATGTTTTAAGACATCGGTGGGAATATTCCTGCGACAAAGCTAAAAGGGAGCTTGATTATAGGCCCAGAAGCCTGAAAGATGGACTTGCAGAGGTACTACTATGGTTGAAGAACTTGGGCCTGATAAGATATTAG
Predicted protein sequences of Glyma06g04186
>Glyma06g04186.1   sequence type=predicted peptide   gene model=Glyma06g04186   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MWGFGGRYYWERKVACEKVDGIVVVFAWMSSEEKHLMKYVDLYSSIGWNSLVCHSQFLNMFFPEKATILAVDILNELVEVLKIRPCPIVFASFSGGAKACMQKVLQDDYQIVRDCISGYIYDSSPVDFTSDLGVRFLLQPSVLKVSHPPRFASWIANGIASGLDSLFLSRFESQRAEYWWTLYSTINMQVPYLILCSENDNLAPFQVISNFFQRLKDLGGDVKLLKWSASPHVGHFRHHPIDYKAAITEILGKAVAIYHSKNSRIEDEKQGIEGTKDEITDPFSELRKAAMFSTSFQGFALAPSDNLSSSSTEYYVGKGVGTIADERKGGFIHLPSRPSINANGVLGQILFDVCVPKNVEDWSRKEAEAEETMKILVTGASGFLGGKLCDALVRQGYSVRVLVRSTSDISALSPHIEIFYGDITDYASLLAACFSCTLVFHLAALVEPWLPDPSKFFSVNVGGLKNVLAAVKETRTVEKLLYTSSFFALGPTDGIVADENQVHHEKYFCTEYEKSKVAADKIAVQAASEGVPIVLLYPGVIYGPGKVTAGNVLARMIVERFSGRLPGYVGYGNDRFSFSHVEDVVEGHIAAMKKGEAGNRYLLTGENASFKHVFDMAAAITHTKKPLFSIPLWLIQLYGCLSVFFSRITGMLPLISPPTVHVLRHRWEYSCDKAKRELDYRPRSLKDGLAEVLLWLKNLGLIRY*






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