Report for Sequence Feature Glyma06g04170
Feature Type: gene_model
Chromosome: Gm06
Start: 2890931
stop: 2892214
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g04170
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G47410 AT
Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages. | chr1:17394818-17395508 FORWARD LENGTH=189
SoyBase E_val: 6.00E-31 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0010413 GO-bp
Annotation by Michelle Graham. GO Biological Process: glucuronoxylan metabolic process
SoyBase N/A ISS
GO:0016926 GO-bp
Annotation by Michelle Graham. GO Biological Process: protein desumoylation
SoyBase N/A ISS
GO:0042546 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis
SoyBase N/A ISS
GO:0044036 GO-bp
Annotation by Michelle Graham. GO Biological Process: cell wall macromolecule metabolic process
SoyBase N/A ISS
GO:0045492 GO-bp
Annotation by Michelle Graham. GO Biological Process: xylan biosynthetic process
SoyBase N/A ISS
GO:0005739 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
UniRef100_UPI0002339BCB UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002339BCB related cluster n=1 Tax=unknown RepID=UPI0002339BCB
SoyBase E_val: 2.00E-150 ISS
Expression Patterns of Glyma06g04170
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g04170
Paralog Evidence Comments
Glyma04g03990 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g04170 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g038400 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g04170
Coding sequences of Glyma06g04170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g04170.1 sequence type=CDS gene model=Glyma06g04170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGATAATTAATTTCCACATGGGTGTGTTCTACCATGAAGAGCCACCAAACCATCCCAAGAGATGCAAATACCTTGTGGCAACTTTTATTAAGGAAGTTTTCTCCAGTTGCCAGAGTTTTGCAGCACGGCTTTCAACTTCAAGTTTTGAGGATGAGTACCCAGTGAGCGATTTTGACGAGGAACAAGAATTGTTTATCTCAGCAGTGATAAGCCGAACCATGGAGAAACAGAAGCACAAGCCAAATGTGTTGAGACACAACTTTTCTTGGGTATACTCTCCAGCAACGAAAGAACTTTATTTCACTACTCAGGCAGTGGCACCACAAGAAAAGGTGGAGAGTGATCAAGAAAGTGATGAAGGAGAAGAGTTTCTGTCAGTTAAAAGTTATTTCTCACGCTGTTCAAGTTCGCCAAGTGGGGGGGAAGCATTCTATTCTGTGAAGACAAACCTTTCACGATGTTCAAGCTTGAACGAACTTGACTTGTCCAAATATAGGAGGCCCTCAGTGATTCAGGAGTTTTGTCATTGCGAGGGATGGCCTTTTGGTCTTTGCCGCAGAGCTGTGTTGCTTCCACCACTGCCCAAGTCACCTTCTGAGTCATGGTTGTCGCTTAAAATGCAACCAACTTCTAACAAACCATGA
Predicted protein sequences of Glyma06g04170
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g04170.1 sequence type=predicted peptide gene model=Glyma06g04170 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MIINFHMGVFYHEEPPNHPKRCKYLVATFIKEVFSSCQSFAARLSTSSFEDEYPVSDFDEEQELFISAVISRTMEKQKHKPNVLRHNFSWVYSPATKELYFTTQAVAPQEKVESDQESDEGEEFLSVKSYFSRCSSSPSGGEAFYSVKTNLSRCSSLNELDLSKYRRPSVIQEFCHCEGWPFGLCRRAVLLPPLPKSPSESWLSLKMQPTSNKP*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
