Glyma06g04140 - SoyBase

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Report for Sequence Feature Glyma06g04140

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2881673
stop:	2883094
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04140

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47480	AT	Annotation by Michelle Graham. TAIR10: alpha/beta-Hydrolases superfamily protein \| chr1:17417623-17419296 FORWARD LENGTH=314	SoyBase	E_val: 2.00E-126	ISS
GO:0008152	GO-bp	Annotation by Michelle Graham. GO Biological Process: metabolic process	SoyBase	N/A	ISS
GO:0048765	GO-bp	Annotation by Michelle Graham. GO Biological Process: root hair cell differentiation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0016787	GO-mf	Annotation by Michelle Graham. GO Molecular Function: hydrolase activity	SoyBase	N/A	ISS
KOG1515	KOG	Arylacetamide deacetylase	JGI		ISS
PTHR23024	Panther	MEMBER OF 'GDXG' FAMILY OF LIPOLYTIC ENZYMES	JGI		ISS
PTHR23024:SF10	Panther	CARBOXYLESTERASE-RELATED	JGI		ISS
PF07859	PFAM	alpha/beta hydrolase fold	JGI		ISS
UniRef100_G7J6B0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Gibberellin receptor GID1 n=1 Tax=Medicago truncatula RepID=G7J6B0_MEDTR	SoyBase	E_val: 2.00E-156	ISS
UniRef100_I1K7Y1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7Y1_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g04140

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04140

Paralog	Evidence	Comments
Glyma04g03980	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04140 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g038000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04140

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g04140

Limit To All Plant Sequences

>Glyma06g04140.1   sequence type=CDS   gene model=Glyma06g04140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATGTTCCAAACAGCCCGGAAATCTCGGTTGATGTTCCTCCTTACCTTCGAGTGCACAAAGACAGCACGGTCGAGAGAATTGCCGGCACCCAAGTCGTTCCCGCAGGCCTCGATTCCGACACCAACGTTGTCTCCAAAGACATCCTCGTCGTCCCCGAAACCGGCGTCACTGGCAGGCTCTACCGTCCCAATTCCACCCCGCCAACCGCCAATAAGCTCCCTTTACTTGTCTACTTCCACGGCGGCGCCTTCTGCATCTCCTCCGCCTCCGATCCTCTCTACCACACCTCTCTCAACAACCTCGTCGCCGAGGCCAACGTTGTCGCTCTCTCCGTCAATTACAGGCTCGCGCCAGAACACCCTCTTCCCACCGCGTACCAAGACTCTTGGTCCGCGATTCAATGGGTCGCTGACGCCTCTCGTGCTAAACAACACCACCAAGAAGATTGGATCAGGGACAACGTTGACTTTGACAGAGTCTTCCTAGCAGGGGACAGCGCAGGTGCCAACCTGGGACACTACATGGCCTTAAAATTGAATAATAATTTTCCAACAAATGATGGTTTCGATTTCAAGGTTGCGGGTCTTATCATGGTGAACCCTTATTTCTGGGGAAAGGAAGCAATTGGAGTGGAGATTACTGATCCGGAGAGGAAGAAGATGGTGGATAAGTGGTGGAGTTTTGTTTGTCCTTCGGATAAAGGGAACGATGACCCTTTGATTAACCCCTTTGTGGAGGAGGCTCCGGGTATTGAAGGGGTTGCTTGCGATAGGGTTCTTGTTACTGTTGCGGAGAAAGACATACTGAGGGAAAGGGGGAAGCTTTATCACAAAATGTTGAGCAACAGTGACTGGAGAGGAACTGCTGAGTTCCACGAGACTCCAGGGGAGGATCATGTGTTTCACATCTTCAACCCCAACTGCGAGCAAGCAAAGAGTTTGATTAAACGCATTGCTCATTTCATTAATGAACATTGA

Predicted protein sequences of Glyma06g04140

Limit To All Plant Sequences

>Glyma06g04140.1   sequence type=predicted peptide   gene model=Glyma06g04140   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDVPNSPEISVDVPPYLRVHKDSTVERIAGTQVVPAGLDSDTNVVSKDILVVPETGVTGRLYRPNSTPPTANKLPLLVYFHGGAFCISSASDPLYHTSLNNLVAEANVVALSVNYRLAPEHPLPTAYQDSWSAIQWVADASRAKQHHQEDWIRDNVDFDRVFLAGDSAGANLGHYMALKLNNNFPTNDGFDFKVAGLIMVNPYFWGKEAIGVEITDPERKKMVDKWWSFVCPSDKGNDDPLINPFVEEAPGIEGVACDRVLVTVAEKDILRERGKLYHKMLSNSDWRGTAEFHETPGEDHVFHIFNPNCEQAKSLIKRIAHFINEH*

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