SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT2G26560 | AT | Annotation by Michelle Graham. TAIR10: phospholipase A 2A | chr2:11293912-11295708 REVERSE LENGTH=407 | SoyBase | E_val: 0 | ISS |
| GO:0000165 | GO-bp | Annotation by Michelle Graham. GO Biological Process: MAPK cascade | SoyBase | N/A | ISS |
| GO:0002237 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin | SoyBase | N/A | ISS |
| GO:0002679 | GO-bp | Annotation by Michelle Graham. GO Biological Process: respiratory burst involved in defense response | SoyBase | N/A | ISS |
| GO:0006612 | GO-bp | Annotation by Michelle Graham. GO Biological Process: protein targeting to membrane | SoyBase | N/A | ISS |
| GO:0006629 | GO-bp | Annotation by Michelle Graham. GO Biological Process: lipid metabolic process | SoyBase | N/A | ISS |
| GO:0008152 | GO-bp | Annotation by Michelle Graham. GO Biological Process: metabolic process | SoyBase | N/A | ISS |
| GO:0008219 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell death | SoyBase | N/A | ISS |
| GO:0009595 | GO-bp | Annotation by Michelle Graham. GO Biological Process: detection of biotic stimulus | SoyBase | N/A | ISS |
| GO:0009626 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0009646 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to absence of light | SoyBase | N/A | ISS |
| GO:0009697 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid biosynthetic process | SoyBase | N/A | ISS |
| GO:0009723 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to ethylene stimulus | SoyBase | N/A | ISS |
| GO:0009862 | GO-bp | Annotation by Michelle Graham. GO Biological Process: systemic acquired resistance, salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009863 | GO-bp | Annotation by Michelle Graham. GO Biological Process: salicylic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009867 | GO-bp | Annotation by Michelle Graham. GO Biological Process: jasmonic acid mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0010200 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to chitin | SoyBase | N/A | ISS |
| GO:0010310 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hydrogen peroxide metabolic process | SoyBase | N/A | ISS |
| GO:0010363 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of plant-type hypersensitive response | SoyBase | N/A | ISS |
| GO:0031348 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of defense response | SoyBase | N/A | ISS |
| GO:0031408 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxylipin biosynthetic process | SoyBase | N/A | ISS |
| GO:0042742 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to bacterium | SoyBase | N/A | ISS |
| GO:0043069 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of programmed cell death | SoyBase | N/A | ISS |
| GO:0043900 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of multi-organism process | SoyBase | N/A | ISS |
| GO:0046686 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to cadmium ion | SoyBase | N/A | ISS |
| GO:0050832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to fungus | SoyBase | N/A | ISS |
| GO:0051607 | GO-bp | Annotation by Michelle Graham. GO Biological Process: defense response to virus | SoyBase | N/A | ISS |
| GO:0051707 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to other organism | SoyBase | N/A | ISS |
| GO:0071456 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cellular response to hypoxia | SoyBase | N/A | ISS |
| GO:0005737 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm | SoyBase | N/A | ISS |
| GO:0009507 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: chloroplast | SoyBase | N/A | ISS |
| GO:0016020 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: membrane | SoyBase | N/A | ISS |
| GO:0016298 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: lipase activity | SoyBase | N/A | ISS |
| GO:0045735 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nutrient reservoir activity | SoyBase | N/A | ISS |
| KOG0513 | KOG | Ca2+-independent phospholipase A2 | JGI | ISS | |
| PTHR10470 | Panther | PATATIN-RELATED | JGI | ISS | |
| PF01734 | PFAM | Patatin-like phospholipase | JGI | ISS | |
| UniRef100_G7J6A9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Patatin-like protein n=1 Tax=Medicago truncatula RepID=G7J6A9_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K7Y0 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K7Y0_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g04130 not represented in the dataset |
Glyma06g04130 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g03970 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g037900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g04130.1 sequence type=CDS gene model=Glyma06g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGAGAGAACATTGTCATCCCTTCTACAGATTCAGCCTCCAACCTATGGAAATTTAGTCACTATTCTCAGCATCGACGGAGGTGGTATCAGGGGCATTATCCCCGCAACTATTCTTGCTTTCCTTGAAGCCCAACTTCAGGAGTTGGACGGTGAGGATGCAAGGCTTGCAGACTATTTTGATGTGATTGCTGGAACAAGCACAGGTGGTATTGTAACAGCTATGCTAAGTGCTCCAAATGATAATCAGCGTCCTCTATTTGCAGCCAAGGATATCAAGCCCTTTTACTTGGAACATTGCCCAAAGATTTTCCCACAACACAGTGGCTTGTGGGGATCGGTAGGAAAGTTGCTGGGATCGTTGGGAGGACCAAAATACGATGGAAAATACCTTAAAGAAGTGGTGAGAGAGAAACTAGGGCAGACACGTTTGCATGAAACGCTGACGAATATAGTGATTCCCACGTTTGACATAAAGACATTGCAACCAATCATTTTCTCCTCTTACCAAATCAAGAGGTCTCCTTGCTTGGATGCTCGACTCTCTGACATATGCATCAGCACTTCTGCCGCACCTACTTATCTTCCAGCCTACCACTTCAAGAACCAAGATTCACAAGGAAACACGCACGAATTCAACCTTATTGATGGTGGCGTTTGTGCTAATAATCCGACTTTAGTGGCGATGAATCAAGTAACAAAGCAGATAATTAATGAAAATCCGGACTTCTTTTCCATCAAGCCAATGGAATATGGTCGTTTCCTGATAATCTCTCTAGGCACTGGAACCCCTAAGAATGAACAGAAATTCAATGCACAAATGGCAGCAAAATGGGGTCTGTTGGATTGGTTAACCAATTCTGGTTCTACTCCCTTAATCGATGTGTTTACTCAGTCCAGCGCAGATATGGTTGATTTTCATCTTGCTACCGTCACTCAAGCACTGCATTCAGAAAATAATTACCTTCGGATACAGGATGATACATTGACCGGTACAGACTCTTCAGTTGATATTGCCACAAAAGAGAATTTGGAAAAACTTAGCCAAATTGGTGAGAGGTTGTTGAAGAAACCAGTATCTCAGATCAATTTGGAGGATGGTCTGTTTGAATCGGTAGGAAATGGGGAGACCAATGAAAATGCTCTCAAAAGGTTTGCGAAAATACTTTCGCAAGAGAGGAGGCTCCGAGAATCAAAATCCCCTCACACTAAGAAGGTCCCAAGCTACTTTGCTCGTGAATTCTGA
>Glyma06g04130.1 sequence type=predicted peptide gene model=Glyma06g04130 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MERTLSSLLQIQPPTYGNLVTILSIDGGGIRGIIPATILAFLEAQLQELDGEDARLADYFDVIAGTSTGGIVTAMLSAPNDNQRPLFAAKDIKPFYLEHCPKIFPQHSGLWGSVGKLLGSLGGPKYDGKYLKEVVREKLGQTRLHETLTNIVIPTFDIKTLQPIIFSSYQIKRSPCLDARLSDICISTSAAPTYLPAYHFKNQDSQGNTHEFNLIDGGVCANNPTLVAMNQVTKQIINENPDFFSIKPMEYGRFLIISLGTGTPKNEQKFNAQMAAKWGLLDWLTNSGSTPLIDVFTQSSADMVDFHLATVTQALHSENNYLRIQDDTLTGTDSSVDIATKENLEKLSQIGERLLKKPVSQINLEDGLFESVGNGETNENALKRFAKILSQERRLRESKSPHTKKVPSYFAREF*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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