Glyma06g04100 - SoyBase

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Report for Sequence Feature Glyma06g04100

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2852624
stop:	2859816
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04100

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47490	AT	Annotation by Michelle Graham. TAIR10: RNA-binding protein 47C \| chr1:17424801-17427182 FORWARD LENGTH=432	SoyBase	E_val: 1.00E-173	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005737	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytoplasm	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0000166	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotide binding	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0003723	GO-mf	Annotation by Michelle Graham. GO Molecular Function: RNA binding	SoyBase	N/A	ISS
GO:0008143	GO-mf	Annotation by Michelle Graham. GO Molecular Function: poly(A) RNA binding	SoyBase	N/A	ISS
KOG0148	KOG	Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily)	JGI		ISS
PTHR24012	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24012:SF67	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00076	PFAM	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	JGI		ISS
UniRef100_B9R7H3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Nuclear acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9R7H3_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI0002338EBF	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002338EBF related cluster n=1 Tax=unknown RepID=UPI0002338EBF	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g04100

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04100

Paralog	Evidence	Comments
Glyma04g03950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04100 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g037600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04100

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g04100

Limit To All Plant Sequences

>Glyma06g04100.3   sequence type=transcript   gene model=Glyma06g04100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
AAAATAATAATAAAAGAAAGAGAAATAAATTCCAGTGAGGAAAGAGGTGGCGGCGGATCCTGGAGAGAGAGAGGGAAGCCAAGTTAGCCAAGCATACTACTACTACTACTACTACTACTAGTGTTATTAATAGATCCAACGGTTGAAATCGAATCCCACCCCTTGATCCAACGGGAGAAAAGGCAACCGCGTTCACGAAGCCAACCCAAGAATCCGTCATCCTCATCTTCTCAAAATCCAGATTCAACCCTTTTCTCTCTCACCCCTCACTAACCAACTTGCCTCGCCTCTTTCTATTTTTTATTGCTTTTTCGTATTTTCGGTATTAGAAAACAAATTAACCAGAGAGAGGCGCTTGCCGTAACGCTAATTGTGAAAGAAGATGCAACCAACATCCAACGGCTCTGATTCGCAAGCGACGGAGCAGCGGACGCCGCCGCCCCAGTGGATGCCGATGCAGTACCCGGCAGCGGCGATGGTAATGCAGCACCACATGATGCCGCCTCAACATTACGCTCCTCCGCCGCCGCAGCCCTACATGGCCTACCACCACTACCAACAACAGCTGCCGCACGCCCTGCACGCGCACCATCAGGGATCCAGTGCCGAGAACAAGACCGTTTGGGTCGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTCCAACGGCGAGATTTCCTCAATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACATGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTCCGCCTTAACTGGGCAACATTTGGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCATGTTGCATGAAACATTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATGATGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAGACATCTGGCTACCAACAAGGAAGTCAGTCAAATGGCATATCCAGCCAATCTGAAGCTGATTCTACAAACACAACTATATTTGTCGGAGGACTTGACTCTAATGTTACAGCTGAAGATCTTAAGCAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAAATACCTGTTGGAAAAGGATGTGGTTTTACAATTTGCAACAGTAGGAGTCCTGGCCCAAAAAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACGATTGGCAAACAAATGGTTCGTCTTTCATGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGCAGATTTCGGCAATGCTTGGAGTGGGGCGTATTATGGAGGGCCTGTTTATGATGGTTATGGATATGCTTTGCCACCATCTCACGACCCAAGCATATATGCTGCTGCTTATGGGGCTTACCCTATTTATGGAGGACACCAACAGCAAGTAAGCTGAGTGCAGGAACAACATGGTGCTTCAACGAGCAACTTAACTTGTAACTTGCTTGGTCTGTTGAATTCTGAAGAATCCCTCCTAATTGTGGAGTGGAGTTGAATTTTGATAACCGGAGGTAGCACTGTAGGAATCCAATTAATCATTCGTTTAGACTCGTAGGAGTAATCAGGATTAAACTTGTTTGTTGAAATAATTTAACTATGCTTAAGTTTGCCCTCTTGCTTGCATTTTAATTGTTTTATTTTGGCGCTTCACATTGTAACCTTCACTTTTACGGCTTGTTTGGTTGGAGGAGCGGGAGGAGAAACAGTAGAAATGGAAATGATTAAATATGTTTTGTATGATAGAAATAGAAAGGTCGTAATTAAAAAGTTAGTGGATTTCACATGTTTTTATTTT

Coding sequences of Glyma06g04100

Limit To All Plant Sequences

>Glyma06g04100.2   sequence type=CDS   gene model=Glyma06g04100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACCAACATCCAACGGCTCTGATTCGCAAGCGACGGAGCAGCGGACGCCGCCGCCCCAGTGGATGCCGATGCAGTACCCGGCAGCGGCGATGGTAATGCAGCACCACATGATGCCGCCTCAACATTACGCTCCTCCGCCGCCGCAGCCCTACATGGCCTACCACCACTACCAACAACAGCTGCCGCACGCCCTGCACGCGCACCATCAGGGATCCAGTGCCGAGAACAAGACCGTTTGGGTCGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTCCAACGGCGAGATTTCCTCAATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACATGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTCCGCCTTAACTGGGCAACATTTGGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCATGTTGCATGAAACATTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATGATGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAGACATCTGGCTACCAACAAGGAAGTCAGTCAAATGGCATATCCAGCCAATCTGAAGCTGATTCTACAAACACAACTATATTTGTCGGAGGACTTGACTCTAATGTTACAGCTGAAGATCTTAAGCAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAAATACCTGTTGGAAAAGGATGTGGTTTTACAATTTGCAACAGTAGGAGTCCTGGCCCAAAAAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACGATTGGCAAACAAATGGTTCGTCTTTCATGGGGCCGCAATCCAGCAAATAAGCAGCAGTTTAGAGCAGATTTCGGCAATGCTTGGAGTGGGGCGTATTATGGAGGGCCTGTTTATGATGGTTATGGATATGCTTTGCCACCATCTCACGACCCAAGCATATATGCTGCTGCTTATGGGGCTTACCCTATTTATGGAGGACACCAACAGCAAGTAAGCTGA

>Glyma06g04100.3   sequence type=CDS   gene model=Glyma06g04100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCAACCAACATCCAACGGCTCTGATTCGCAAGCGACGGAGCAGCGGACGCCGCCGCCCCAGTGGATGCCGATGCAGTACCCGGCAGCGGCGATGGTAATGCAGCACCACATGATGCCGCCTCAACATTACGCTCCTCCGCCGCCGCAGCCCTACATGGCCTACCACCACTACCAACAACAGCTGCCGCACGCCCTGCACGCGCACCATCAGGGATCCAGTGCCGAGAACAAGACCGTTTGGGTCGGCGATTTGCATCATTGGATGGACGAAAATTATCTCCACCGCTGTTTCGCTTCCAACGGCGAGATTTCCTCAATTAAGGTTATTCGCAATAAGCAGACTGGTCTATCAGAGGGTTATGGATTTGTGGAATTCTATTCACATGGCACAGCTGAGAAAGTTTTGCAGAATTATGCTGGGATATTGATGCCTAACACAGAGCAACCTTTCCGCCTTAACTGGGCAACATTTGGCACAGGAGACAAGCGTTCAGATAATGTTCCTGATCTTTCTATTTTTGTAGGAGATTTAGCTGCTGATGTTACAGATAGCATGTTGCATGAAACATTTTCTAATAGATACCCATCTGTTAAAGCTGCAAAAGTTGTTTTTGATGCCAATACTGGCCGTTCAAAGGGTTATGGTTTCGTCAGGTTTGGAGATGATGATGAGAGGTCTCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGTATTGGTGCTGCAACTCCTAGGAAGACATCTGGCTACCAACAAGGAAGTCAGTCAAATGGCATATCCAGCCAATCTGAAGCTGATTCTACAAACACAACTATATTTGTCGGAGGACTTGACTCTAATGTTACAGCTGAAGATCTTAAGCAACCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAAATACCTGTTGGAAAAGGATGTGGTTTTACAATTTGCAACAGTAGGAGTCCTGGCCCAAAAAATGCTGAAGAGGCATTGCAGAAGCTAAATGGGACAACGATTGGCAAACAAATGGTTCGTCTTTCATGGGGCCGCAATCCAGCAAATAAGCAGTTTAGAGCAGATTTCGGCAATGCTTGGAGTGGGGCGTATTATGGAGGGCCTGTTTATGATGGTTATGGATATGCTTTGCCACCATCTCACGACCCAAGCATATATGCTGCTGCTTATGGGGCTTACCCTATTTATGGAGGACACCAACAGCAAGTAAGCTGA

Predicted protein sequences of Glyma06g04100

Limit To All Plant Sequences

>Glyma06g04100.2   sequence type=predicted peptide   gene model=Glyma06g04100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQPTSNGSDSQATEQRTPPPQWMPMQYPAAAMVMQHHMMPPQHYAPPPPQPYMAYHHYQQQLPHALHAHHQGSSAENKTVWVGDLHHWMDENYLHRCFASNGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWATFGTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDDERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGISSQSEADSTNTTIFVGGLDSNVTAEDLKQPFSQYGEIVSVKIPVGKGCGFTICNSRSPGPKNAEEALQKLNGTTIGKQMVRLSWGRNPANKQQFRADFGNAWSGAYYGGPVYDGYGYALPPSHDPSIYAAAYGAYPIYGGHQQQVS*

>Glyma06g04100.3   sequence type=predicted peptide   gene model=Glyma06g04100   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MQPTSNGSDSQATEQRTPPPQWMPMQYPAAAMVMQHHMMPPQHYAPPPPQPYMAYHHYQQQLPHALHAHHQGSSAENKTVWVGDLHHWMDENYLHRCFASNGEISSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQNYAGILMPNTEQPFRLNWATFGTGDKRSDNVPDLSIFVGDLAADVTDSMLHETFSNRYPSVKAAKVVFDANTGRSKGYGFVRFGDDDERSQAMTEMNGVYCSSRPMRIGAATPRKTSGYQQGSQSNGISSQSEADSTNTTIFVGGLDSNVTAEDLKQPFSQYGEIVSVKIPVGKGCGFTICNSRSPGPKNAEEALQKLNGTTIGKQMVRLSWGRNPANKQFRADFGNAWSGAYYGGPVYDGYGYALPPSHDPSIYAAAYGAYPIYGGHQQQVS*

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