Glyma06g04065 - SoyBase

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Report for Sequence Feature Glyma06g04065

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2834133
stop:	2843722
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g04065

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT2G26540	AT	Annotation by Michelle Graham. TAIR10: uroporphyrinogen-III synthase family protein \| chr2:11287666-11290224 REVERSE LENGTH=321	SoyBase	E_val: 3.00E-116	ISS
GO:0006779	GO-bp	Annotation by Michelle Graham. GO Biological Process: porphyrin-containing compound biosynthetic process	SoyBase	N/A	ISS
GO:0006780	GO-bp	Annotation by Michelle Graham. GO Biological Process: uroporphyrinogen III biosynthetic process	SoyBase	N/A	ISS
GO:0033014	GO-bp	Annotation by Michelle Graham. GO Biological Process: tetrapyrrole biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0004852	GO-mf	Annotation by Michelle Graham. GO Molecular Function: uroporphyrinogen-III synthase activity	SoyBase	N/A	ISS
PF02602	PFAM	Uroporphyrinogen-III synthase HemD	JGI		ISS
UniRef100_G7J5U1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Uroporphyrinogen-III synthase n=1 Tax=Medicago truncatula RepID=G7J5U1_MEDTR	SoyBase	E_val: 5.00E-154	ISS
UniRef100_I1K7X5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7X5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g04065

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g04065 not represented in the dataset	Glyma06g04065 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g04065

Paralog	Evidence	Comments
Glyma04g03940	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g04065 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g037300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g04065

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g04065

Limit To All Plant Sequences

>Glyma06g04065.1   sequence type=CDS   gene model=Glyma06g04065   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCCATTTTTCTCTCTCCCCTCTCTCCTGTGCACCTTCTCCTCTACCACCACGCCGCCGAATCTTTCTCTCTCCTCCTCGAGCCGCCGCATCTTCCGCCACCGACGTCGTTTCCACTTCCACTTCCACTTCATCTTCTGCTTCGAATTTCGCGCCCAAAGTCGTTGTCACCAGAGAGCGCGGCAAGAACGCCAAGCTTATCGCTGCTCTGGCTAAACATGAAATCAATTGTTTGGAGCTTCCACTCATTGAGCACATGCAAGGACCTGATTTAGATAGGCTTCCTTCTGTATTAGGTGACAATGCATTTGATTGGGTTGTGATAACGTCTCCTGAGGCAGGCTCAGTCTTTCTAGAGGCATGGAGAGCTTCTGGGATGCCTCATGTCAAAATAGGTGTTGTTGGGGCTGGCACTGCAAGCATTTTCAAGGAAGCTTTGCAGTCTTCCAACCGATCCCTTGATATTGCCTTTGTGCCATCAAAAGCAACAGGAAAGGTTTTGGCTACTGAGCTTCCTAAGATTGGAAGTAAATGCACGGTTCTCTATCCTGCTTCTGCAAAGGCTAGTAATGAGATTGAGGAAGGACTTTCAAATCGTGGATTTGAGGTTACTAGGATGAATACATATACAACGGTGCCAGTTCAACATGTTGACCATACGGTTCTAAAGATAGCACTTGCTGCCCCTGTTGTTACAGTAGCTTCACCATCTTCTATTCGGGCCTGGAAGAATCTTCTTTCAGATTCAGAGTGGAACAATTCTGTTGCGTGCATTGGTGAGACAACTGCTACAATGGCAAGAAGTTTAGGTTTCACAAATGTGTACTTCCCAACACAACCAGGCATCGAAGGCTGGGTCGAGAGCATTCTTGAAGCATTAGGGTTCCTATGA

Predicted protein sequences of Glyma06g04065

Limit To All Plant Sequences

>Glyma06g04065.1   sequence type=predicted peptide   gene model=Glyma06g04065   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAHFSLSPLSCAPSPLPPRRRIFLSPPRAAASSATDVVSTSTSTSSSASNFAPKVVVTRERGKNAKLIAALAKHEINCLELPLIEHMQGPDLDRLPSVLGDNAFDWVVITSPEAGSVFLEAWRASGMPHVKIGVVGAGTASIFKEALQSSNRSLDIAFVPSKATGKVLATELPKIGSKCTVLYPASAKASNEIEEGLSNRGFEVTRMNTYTTVPVQHVDHTVLKIALAAPVVTVASPSSIRAWKNLLSDSEWNNSVACIGETTATMARSLGFTNVYFPTQPGIEGWVESILEALGFL*

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