Glyma06g03960 - SoyBase

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Report for Sequence Feature Glyma06g03960

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2760007
stop:	2763097
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g03960

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G47710	AT	Annotation by Michelle Graham. TAIR10: Serine protease inhibitor (SERPIN) family protein \| chr1:17558271-17560061 FORWARD LENGTH=391	SoyBase	E_val: 3.00E-168	ISS
GO:0010951	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of endopeptidase activity	SoyBase	N/A	ISS
GO:0030162	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of proteolysis	SoyBase	N/A	ISS
GO:0005576	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: extracellular region	SoyBase	N/A	ISS
GO:0048046	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: apoplast	SoyBase	N/A	ISS
GO:0004867	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type endopeptidase inhibitor activity	SoyBase	N/A	ISS
GO:0004869	GO-mf	Annotation by Michelle Graham. GO Molecular Function: cysteine-type endopeptidase inhibitor activity	SoyBase	N/A	ISS
KOG2392	KOG	Serpin	JGI		ISS
PTHR11461	Panther	SERINE PROTEASE INHIBITORS, SERPINS	JGI		ISS
PTHR11461:SF24	Panther	gb def: serpin [petromyzon marinus]	JGI		ISS
PF00079	PFAM	Serpin (serine protease inhibitor)	JGI		ISS
UniRef100_G7J5Q8	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Serpin-like protein n=1 Tax=Medicago truncatula RepID=G7J5Q8_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1K7W5	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7W5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g03960

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03960

Paralog	Evidence	Comments
Glyma04g03860	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03960 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g036300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g03960

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g03960

Limit To All Plant Sequences

>Glyma06g03960.1   sequence type=CDS   gene model=Glyma06g03960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACCTCCGTGAATCGATAAGCAACCAAACCGACGTGGCCCTGAGCATCTCAAAGCTCCTGTTGTCGAAAGAAGCTCGGGACAAGAACCTCGTGTATTCGCCGCTGTCGTTGCACGTTGTTCTGAGCATCATCGCCGCTGGCTCCAAGGGCCCCACACTCGATCAGCTTCTCTCCTTCCTCCGATCCAAATCCACCGATCATCTCAACTCCTTCGCCTCTCAGCTCTTCGCCGTCGTGCTCTCCGACGCCTCTCCCGCCGGCGGGCCTCGCCTCTCCTTCGCCGACGGCGTGTGGGTTGAGCAATCCCTCTCGCTTCTCCCTTCCTTCAAACAACTTGTCAGTGCTGATTACAAGGCCACTTTGGCTTCAGTTGATTTCCAGACCAAGGCTGTTGAAGTGGCCAATGAAGTTAATTCATGGGCTGAAAAGGAGACAAATGGACTTGTTAAAGACCTTCTTCCTCCTGGATCAGTTGACAGTTCAACCAGACTCATCTTTGCAAATGCACTGTACTTCAAAGGAGCATGGAATGAAAAGTTTGATTCTTCGATAACAAAAGACTATGATTTTCACCTTCTTGATGGCCGTTCAATCAGGGTTCCCTTCATGACGAGCAGGAAGAATCAGTTTATTAGGGCTTTTGATGGTTTCAAAGTCCTTGGTCTTCCCTACAAGCAAGGTGAAGATAAGCGCCAATTCACCATGTACTTTTTCCTTCCAGAAACAAAAGATGGGCTGTTAGCTTTGGCTGAGAAGTTGGCTTCTGAATCTGGGTTCTTGGAACGCAAGCTTCCTAATAACAAATTGGAAGTAGGAGACTTCAGGATCCCAAGATTCAAAATTTCTTTTGGGTTTGAAGCCTCTAATGTGCTGAAGGAGCTGGGAGTGGTTTTGCCTTTCTCCGTTGGAGGTTTGACAGAAATGGTGGACTCTGCTGTGGGTCAAAACTTGTTTGTTTCCGATATATTTCATAAGTCTTTTATAGAAGTAAATGAAGAAGGCACTGAAGCTGCAGCGGCCACCGCTGCAACTATACAATTTGGGTGTGCGATGTTTCCAACTGAAATAGACTTTGTAGCTGACCACCCTTTCTTGTTCCTGATCAGAGAAGATTTAACTGGAACAGTACTCTTTATCGGACAGGTGTTGAATCCTCAGGCTGAATAA

Predicted protein sequences of Glyma06g03960

Limit To All Plant Sequences

>Glyma06g03960.1   sequence type=predicted peptide   gene model=Glyma06g03960   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDLRESISNQTDVALSISKLLLSKEARDKNLVYSPLSLHVVLSIIAAGSKGPTLDQLLSFLRSKSTDHLNSFASQLFAVVLSDASPAGGPRLSFADGVWVEQSLSLLPSFKQLVSADYKATLASVDFQTKAVEVANEVNSWAEKETNGLVKDLLPPGSVDSSTRLIFANALYFKGAWNEKFDSSITKDYDFHLLDGRSIRVPFMTSRKNQFIRAFDGFKVLGLPYKQGEDKRQFTMYFFLPETKDGLLALAEKLASESGFLERKLPNNKLEVGDFRIPRFKISFGFEASNVLKELGVVLPFSVGGLTEMVDSAVGQNLFVSDIFHKSFIEVNEEGTEAAAATAATIQFGCAMFPTEIDFVADHPFLFLIREDLTGTVLFIGQVLNPQAE*

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