Report for Sequence Feature Glyma06g03950
Feature Type: gene_model
Chromosome: Gm06
Start: 2749705
stop: 2753775
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g03950
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G69850 AT
Annotation by Michelle Graham. TAIR10: nitrate transporter 1:2 | chr1:26296945-26300407 REVERSE LENGTH=585
SoyBase E_val: 2.00E-157 ISS
GO:0009624 GO-bp
Annotation by Michelle Graham. GO Biological Process: response to nematode
SoyBase N/A ISS
GO:0010119 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of stomatal movement
SoyBase N/A ISS
GO:0080168 GO-bp
Annotation by Michelle Graham. GO Biological Process: abscisic acid transport
SoyBase N/A ISS
GO:0005886 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane
SoyBase N/A ISS
GO:0016020 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: membrane
SoyBase N/A ISS
GO:0005215 GO-mf
Annotation by Michelle Graham. GO Molecular Function: transporter activity
SoyBase N/A ISS
GO:0005509 GO-mf
Annotation by Michelle Graham. GO Molecular Function: calcium ion binding
SoyBase N/A ISS
GO:0090440 GO-mf
Annotation by Michelle Graham. GO Molecular Function: abscisic acid transporter activity
SoyBase N/A ISS
KOG1237
KOG
H+/oligopeptide symporter
JGI ISS
PTHR11654 Panther
OLIGOPEPTIDE TRANSPORTER-RELATED
JGI ISS
PTHR11654:SF21 Panther
NITRATE TRANSPORTER (NTL1)
JGI ISS
PF00854 PFAM
POT family
JGI ISS
UniRef100_G7J5Q5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: Peptide transporter PTR3-A n=1 Tax=Medicago truncatula RepID=G7J5Q5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_UPI0002339BC7 UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI0002339BC7 related cluster n=1 Tax=unknown RepID=UPI0002339BC7
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g03950
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g03950
Paralog Evidence Comments
Glyma04g03850 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g03950 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g036200 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g03950
Coding sequences of Glyma06g03950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g03950.1 sequence type=CDS gene model=Glyma06g03950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGGAATCTGCAGAAATATGGGTACCCAACCAAGGGTACAAAGAAGGCTAGGAGGAAACAGAGCTGCACTTTTTGTATATGCTATGGAAGGACTAGAGAACATGGCTTTTGTTGCTAATGCTGTGAGCCTAGTAACTTACTTCTTTGGGTACATGAACTTCAGCTTAACAAAATCTGCCACAACCCTGACCAACTTTTTGGGAACTGCATTTTTACTAGCACTGGTTGGTGGATTAATCAGTGACACCTATCTTTCTAGGTTCAAGACTTGTGTTCTGTTTGCATGCATGGAATTGCTGGGATATGGTATCCTCACAGTTCAAGCACGCTTCCACCAATTAAGACCCATCCCCTGCAAAGATCTGGCACCAACCCAAATGAGTCAATGTGAGGCTGCTACAGGTGGCCATGCTGCAATACTTTATACTGGCCTATACCTTGTTGCTTTAGGAACCGGTGGTATTAAGGCAGCTTTACCAGCCTTAGGGGCTGATCAATTTGATGAAAAAGATCCCAAGGAGGCAGCTCAACTGTCAAGCTTCTTCAACTGGTTCTTGTTCAGCCTTACCATAGGAGCAATAATTGGTGTTACTTTCATTGTTTGGATTGGTGTCAACCTAGGATGGGATTGGAGTTTTATTGTATGCACATTAACAATTCTATTCGCAATTGTCTTCATATGCATGGGCAACTCATTGTACCGAAACAATGTTCCAAAGGGAAGCCCTCTAATTCGAATCATCCAGGTGTTTGTGGCAGCCTTTAGAAACAGAAAACTTCCGATTCCAGATAATACAGACAAACTACATGAGATTCATGAAAAGCGAGGAGGGGACAATTTTGAAATCCTTAAAAGAACAGATCAATTCAGATTCTTTGACCGGGCAGCAATTGCTAGAAGCAGCACAGGTGCAGCAACAAACTCAGGACCCTGGAGACTTTGCACAGTGACACAAGTGGAAGAAACAAAAATCCTAATCCGCATGCTACCAATAATAGTCAGCACCATATTTATGAACACGTGTTTAGCTCAACTTCAGACTTTCACTATACAACAAAGCACCACCATGAACACCAACCTAGGGGGGTTTAAAGTGCCAGGACCCTCTGTCCCAGTCATCCCTTTGATGTTCATGTTTGTCCTAATCCCTTTATACGACCGTGTTTTCGTCCCGCTGGCTCGAAGAATCACGGGGATTCCCACCGGAATTCGACACCTTCAGAGGATTGGAATTGGTTTGGTTCTGTCTGCTGTTTCCATGGCAGTGGCTGGTTTTGTGGAAACACACCGCAAGTCCGTGGCCATAAAGCACAACATGGTGGATAGCAGAGAGCCTTTGCCAATAAGTGTGTTCTGGCTGGGTTTCCAATATGCTATTTTTGGAGCTGCAGACATGTTTACCCTGATAGGGCTTTTGGAGTTTTTCTATGCAGAAAGTTCAGCTGGAATGAAGTCACTTGGCACTGCAATCTCGTGGTGTTCCGTCGCATTCGGTTACTTCACGAGCACGGTGGTCGTTGAGGTGGTTAACAAAGTGAGTGGAGGGTGGCTGGCTAATAACAACTTGAATAGAGACAACCTCAACTACTTCTACTGGTTGTTGTCTGTGTTAAGTGTTGTAAACTTTGGATTTTACTTGGTTTGTGCTTCTTGGTATAGATATAAAACGGTGGAAAACGAGCAAGATGATTCAAAAGATAATGTTGACATGGCCTAG
Predicted protein sequences of Glyma06g03950
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g03950.1 sequence type=predicted peptide gene model=Glyma06g03950 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MGICRNMGTQPRVQRRLGGNRAALFVYAMEGLENMAFVANAVSLVTYFFGYMNFSLTKSATTLTNFLGTAFLLALVGGLISDTYLSRFKTCVLFACMELLGYGILTVQARFHQLRPIPCKDLAPTQMSQCEAATGGHAAILYTGLYLVALGTGGIKAALPALGADQFDEKDPKEAAQLSSFFNWFLFSLTIGAIIGVTFIVWIGVNLGWDWSFIVCTLTILFAIVFICMGNSLYRNNVPKGSPLIRIIQVFVAAFRNRKLPIPDNTDKLHEIHEKRGGDNFEILKRTDQFRFFDRAAIARSSTGAATNSGPWRLCTVTQVEETKILIRMLPIIVSTIFMNTCLAQLQTFTIQQSTTMNTNLGGFKVPGPSVPVIPLMFMFVLIPLYDRVFVPLARRITGIPTGIRHLQRIGIGLVLSAVSMAVAGFVETHRKSVAIKHNMVDSREPLPISVFWLGFQYAIFGAADMFTLIGLLEFFYAESSAGMKSLGTAISWCSVAFGYFTSTVVVEVVNKVSGGWLANNNLNRDNLNYFYWLLSVLSVVNFGFYLVCASWYRYKTVENEQDDSKDNVDMA*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
