Glyma06g03940 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g03940

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2745524
stop:	2747935
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g03940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G06870	AT	Annotation by Michelle Graham. TAIR10: Peptidase S24/S26A/S26B/S26C family protein \| chr1:2108832-2110642 FORWARD LENGTH=367	SoyBase	E_val: 4.00E-93	ISS
GO:0006508	GO-bp	Annotation by Michelle Graham. GO Biological Process: proteolysis	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008233	GO-mf	Annotation by Michelle Graham. GO Molecular Function: peptidase activity	SoyBase	N/A	ISS
GO:0008236	GO-mf	Annotation by Michelle Graham. GO Molecular Function: serine-type peptidase activity	SoyBase	N/A	ISS
PTHR12383	Panther	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	JGI		ISS
PTHR12383:SF1	Panther	MITOCHONDRIAL INNER MEMBRANE PROTEASE	JGI		ISS
PF00717	PFAM	Peptidase S24-like	JGI		ISS
UniRef100_G7J5Q2	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Thylakoidal processing peptidase n=2 Tax=Medicago truncatula RepID=G7J5Q2_MEDTR	SoyBase	E_val: 2.00E-136	ISS
UniRef100_I1K7W3	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7W3_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g03940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03940

Paralog	Evidence	Comments
Glyma04g03840	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g036100	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g03940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g03940

Limit To All Plant Sequences

>Glyma06g03940.3   sequence type=transcript   gene model=Glyma06g03940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATTCGTGTAACTTTTTCCTTTTCGGGCTACGTCGCCCAGAGCCTCGCCTCCTCCGCCGGCGTGCGCGTCGCCAATTCGCGATGTGTCCAGGAATGCTGGATCCGCACGCGCCTCTTCGGGGGCGCCACCCAGAAGACGGATCTAGATTCCTCCGCCGGCGGCGGAGTCCGCAATTTCGCCAGGCCCAACTGCTGGGCCCAGTCCACTTACTCGAGCCTCGCCGGGGAATTTCTCGGCGACGGTTGCAGCAAGAGCCCAATCATCTTGGGCCTGATTTCGATCATGAAGTCAACGGTGGGTGTGTCTGGGTCATCCGCGGCGGCTGCGGGTATTTTCGGTATTTCGCCATTTAAAACCACTTCGATTATCCCCTTCTTGCCAGGTTCGAAGTGGCTTCCTTGCAACGAGTCCGTTCCCGACCCCACCTCCTGGGAGGTCGACAAAGGTGGCACGCGACGCGTCGTTTCGGAAACAGAATCGAATTTTGCCAAGATTAGTTGGCTTTCGCGGTTGATGAACGTGTGTTCCGAAGACGCGAAGGCTGCGTTCACTGCTCTTACCGTTAGTTTACTCTTTAAATCGTCCTTGGCTGAACCCAGATCAATTCCCTCCTCTTCTATGTACCCTACTCTTGAAGTAGGTGACCGTGTTTCGTTCTTCTTTAGAAAGCCTGATGTTTCGGATATAGTCATTTTCAAAGCTCCTCCTTGGTTAGAGGAGTTTGGTTTTAGTTCGTCTGATGTATTTATAAAGAGGATTGTGGCTAAGGCTGGGGACACTGTTGAGGTGCGTGATGGGAAACTACTGATAAATGGTGCTGCTGAAGAACAAGAATTTGTATTAGAGGCTCTAGCTTATGAGATGGATCCAATGGTAATGTTTACAATTTGCTGCGGTGATTATGTTTGATTGAATGATTGTGGGACTTGAGAATGTGGTTAATGGTAGTTTTGTGTTTTGGTTGCAGGTTGTGCCAGAAGGATATGTGTTTGTAATGGGCGACAATCGGAATAAAAGCTTTGATTCTCATAACTGGTAATGTTCTAGTCCCTTTTGTGCTTTCTGTGTTTATGTTGGAGGATATTTATTTGAGCCTTAGGTCGATGACAGATTTTGGCCCATTTGTTGATGCTGTTCCTCTCAAAGCATCTAGCTTAAGTAAACTTGCCATCGGATCTCAGAAGTTCAAAACATATTTTGGTATATGTACATTGGGATAATGATGTCTGACTAAACATATTTGCTGTGTTTTGTTCTATCAGGGGTCCCCTGCCGGTTGAGAACATTGTTGGTAGGTCCATGTTTCGGTACTGGCCTCCATCCAAGGCATCTGACACTGATACCCATCGTAAACTCCCACCTGGTAACAAACCTGTGGCAATTTCTTGACATGATTCCCGCAGCTTTGTGAAGGTGATGAAGGTTTCCAGATACGGTCGTTTGTTCTAAATTGTTAGCTTGAGCTGACTTTGCACACAGTTTGGGATGAATATCTTATTCATTGATACAAATTTGTCGATGACCTAATAATACCATTAAGCGTTCATTAGTGCCATCTGAGATGTATTTCTATTGCTGAAGTGCGGGGAGAAAAAAAAGAATTAAAAAAGCATGATGATTTTGCCCCCCCCCAAAAAAAAAAATGAAACATGGTGATTGATTTGTTTTGTATTCTTTAATGTATGCATAGCGTATGAATGCTAGAAACTGGAGGAAAGATTTGACATGGAGCTAATTGACTCCCTGTGAGTTCCATAATCAAGCTTCCTCCCATTTTGAATCTGTCTGTAATGCCATTCAGTCATACATGAAATTGTATGGACTTGCCTATTTTAAAATAATAAAGTAAGAATGCAATTTCACTCTTTCCA

Coding sequences of Glyma06g03940

Limit To All Plant Sequences

>Glyma06g03940.2   sequence type=CDS   gene model=Glyma06g03940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATTCGTGTAACTTTTTCCTTTTCGGGCTACGTCGCCCAGAGCCTCGCCTCCTCCGCCGGCGTGCGCGTCGCCAATTCGCGATGTGTCCAGGAATGCTGGATCCGCACGCGCCTCTTCGGGGGCGCCACCCAGAAGACGGATCTAGATTCCTCCGCCGGCGGCGGAGTCCGCAATTTCGCCAGGCCCAACTGCTGGGCCCAGTCCACTTACTCGAGCCTCGCCGGGGAATTTCTCGGCGACGGTTGCAGCAAGAGCCCAATCATCTTGGGCCTGATTTCGATCATGAAGTCAACGGTGGGTGTGTCTGGGTCATCCGCGGCGGCTGCGGGTATTTTCGGTATTTCGCCATTTAAAACCACTTCGATTATCCCCTTCTTGCCAGGTTCGAAGTGGCTTCCTTGCAACGAGTCCGTTCCCGACCCCACCTCCTGGGAGGTCGACAAAGGTGGCACGCGACGCGTCGTTTCGGAAACAGAATCGAATTTTGCCAAGATTAGTTGGCTTTCGCGGTTGATGAACGTGTGTTCCGAAGACGCGAAGGCTGCGTTCACTGCTCTTACCGTTAGTTTACTCTTTAAATCGTCCTTGGCTGAACCCAGATCAATTCCCTCCTCTTCTATGTACCCTACTCTTGAAGTAGGTGACCGTGTTTCGTTCTTCTTTAGAAAGCCTGATGTTTCGGATATAGTCATTTTCAAAGCTCCTCCTTGGTTAGAGGAGTTTGGTTTTAGTTCGTCTGATGTATTTATAAAGAGGATTGTGGCTAAGGCTGGGGACACTGTTGAGGTGCGTGATGGGAAACTACTGATAAATGGTGCTGCTGAAGAACAAGAATTTGTATTAGAGGCTCTAGCTTATGAGATGGATCCAATGGTAATGTTTACAATTTGCTGCGGTGATTATGTTTGA

>Glyma06g03940.3   sequence type=CDS   gene model=Glyma06g03940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTATTCGTGTAACTTTTTCCTTTTCGGGCTACGTCGCCCAGAGCCTCGCCTCCTCCGCCGGCGTGCGCGTCGCCAATTCGCGATGTGTCCAGGAATGCTGGATCCGCACGCGCCTCTTCGGGGGCGCCACCCAGAAGACGGATCTAGATTCCTCCGCCGGCGGCGGAGTCCGCAATTTCGCCAGGCCCAACTGCTGGGCCCAGTCCACTTACTCGAGCCTCGCCGGGGAATTTCTCGGCGACGGTTGCAGCAAGAGCCCAATCATCTTGGGCCTGATTTCGATCATGAAGTCAACGGTGGGTGTGTCTGGGTCATCCGCGGCGGCTGCGGGTATTTTCGGTATTTCGCCATTTAAAACCACTTCGATTATCCCCTTCTTGCCAGGTTCGAAGTGGCTTCCTTGCAACGAGTCCGTTCCCGACCCCACCTCCTGGGAGGTCGACAAAGGTGGCACGCGACGCGTCGTTTCGGAAACAGAATCGAATTTTGCCAAGATTAGTTGGCTTTCGCGGTTGATGAACGTGTGTTCCGAAGACGCGAAGGCTGCGTTCACTGCTCTTACCGTTAGTTTACTCTTTAAATCGTCCTTGGCTGAACCCAGATCAATTCCCTCCTCTTCTATGTACCCTACTCTTGAAGTAGGTGACCGTGTTTCGTTCTTCTTTAGAAAGCCTGATGTTTCGGATATAGTCATTTTCAAAGCTCCTCCTTGGTTAGAGGAGTTTGGTTTTAGTTCGTCTGATGTATTTATAAAGAGGATTGTGGCTAAGGCTGGGGACACTGTTGAGGTGCGTGATGGGAAACTACTGATAAATGGTGCTGCTGAAGAACAAGAATTTGTATTAGAGGCTCTAGCTTATGAGATGGATCCAATGGTAATGTTTACAATTTGCTGCGGTGATTATGTTTGA

Predicted protein sequences of Glyma06g03940

Limit To All Plant Sequences

>Glyma06g03940.2   sequence type=predicted peptide   gene model=Glyma06g03940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIRVTFSFSGYVAQSLASSAGVRVANSRCVQECWIRTRLFGGATQKTDLDSSAGGGVRNFARPNCWAQSTYSSLAGEFLGDGCSKSPIILGLISIMKSTVGVSGSSAAAAGIFGISPFKTTSIIPFLPGSKWLPCNESVPDPTSWEVDKGGTRRVVSETESNFAKISWLSRLMNVCSEDAKAAFTALTVSLLFKSSLAEPRSIPSSSMYPTLEVGDRVSFFFRKPDVSDIVIFKAPPWLEEFGFSSSDVFIKRIVAKAGDTVEVRDGKLLINGAAEEQEFVLEALAYEMDPMVMFTICCGDYV*

>Glyma06g03940.3   sequence type=predicted peptide   gene model=Glyma06g03940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAIRVTFSFSGYVAQSLASSAGVRVANSRCVQECWIRTRLFGGATQKTDLDSSAGGGVRNFARPNCWAQSTYSSLAGEFLGDGCSKSPIILGLISIMKSTVGVSGSSAAAAGIFGISPFKTTSIIPFLPGSKWLPCNESVPDPTSWEVDKGGTRRVVSETESNFAKISWLSRLMNVCSEDAKAAFTALTVSLLFKSSLAEPRSIPSSSMYPTLEVGDRVSFFFRKPDVSDIVIFKAPPWLEEFGFSSSDVFIKRIVAKAGDTVEVRDGKLLINGAAEEQEFVLEALAYEMDPMVMFTICCGDYV*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain