SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g03910

Feature Type:gene_model
Chromosome:Gm06
Start:2726967
stop:2730886
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g03910
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G47640AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2053, membrane (InterPro:IPR019164); Has 204 Blast hits to 204 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 127; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink). | chr1:17518409-17519998 REVERSE L SoyBaseE_val: 4.00E-149ISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0005739GO-cc Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion SoyBaseN/AISS
GO:0005794GO-cc Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
KOG3236 KOG Predicted membrane protein JGI ISS
PTHR12869Panther SMALL SEVEN TRANSMEMBRANE DOMAIN-CONTAINING PROTEIN JGI ISS
PF09767PFAM Predicted membrane protein (DUF2053) JGI ISS
UniRef100_C6T008UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=2 Tax=Glycine max RepID=C6T008_SOYBN SoyBaseE_val: 6.00E-165ISS
UniRef100_G7J5Q0UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane protein n=1 Tax=Medicago truncatula RepID=G7J5Q0_MEDTR SoyBaseE_val: 1.00E-160ISS

Expression Patterns of Glyma06g03910
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03910
ParalogEvidenceComments
Glyma04g03810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03910 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g035800 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g03910
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g03910
>Glyma06g03910.1   sequence type=CDS   gene model=Glyma06g03910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGTCTTTCATTTCTTCAATTGCGCGATTCTCACCTTCGGCCCCCACGCCGTCTACTATTCTGCCACGCCCTTATCTGAGTATGATACACTCGGCACCTCTATCAAAGCCGCTGTTGTTTATCTTGCAACGGCATTAGTGAAGCTTATTTGTCTAGCTACTTTTCTCAAGGTATCAGAGAGCGATAGCTTTGATCCGTATCAGGAGTTTTTGAAGGCGTTAATAGGTTTTATAGATGTTGCTGGGCTTTATTTTGCCTTGACCCAGTTGACTCACAGGAACATCTCTCAGAATCATAAATTTCAAGCAGTTGGACTTGGCTGGGCATTTGCTGACTCTGTGCTGCATCGGTTGGCTCCACTTTGGGTTGGTGCCAGAGGATTAGAATTTACTTGGGATTACATTCTTCAGGGCCTTGAGGCTAATGCAAATTTGGTGTTGAGCATATCCCTTGCTGCACTTGGATCTTTGATGTGGCTTCGAAAAAATAAACCCAAGACCCTCATCCCTATTATATATTTGAGTGCAGGGATTGTAGCAACCATGCCATCTATCACAAGCTATCTGAGGCGTGGATTGGGGTGGCACTTTCCCAAAGTGGTCGGTTTTGAGCTCTTCACATCCCTGGTGATGGCTTTTATAAGCTGGCAACTGTTTTCTGTATGTCAGAGACCTTCAGTGTGA
Predicted protein sequences of Glyma06g03910
>Glyma06g03910.1   sequence type=predicted peptide   gene model=Glyma06g03910   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTVFHFFNCAILTFGPHAVYYSATPLSEYDTLGTSIKAAVVYLATALVKLICLATFLKVSESDSFDPYQEFLKALIGFIDVAGLYFALTQLTHRNISQNHKFQAVGLGWAFADSVLHRLAPLWVGARGLEFTWDYILQGLEANANLVLSISLAALGSLMWLRKNKPKTLIPIIYLSAGIVATMPSITSYLRRGLGWHFPKVVGFELFTSLVMAFISWQLFSVCQRPSV*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo