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Report for Sequence Feature Glyma06g03880

Feature Type:gene_model
Chromosome:Gm06
Start:2708842
stop:2712438
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g03880
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT4G31940AT Annotation by Michelle Graham. TAIR10: cytochrome P450, family 82, subfamily C, polypeptide 4 | chr4:15452040-15453966 FORWARD LENGTH=524 SoyBaseE_val: 2.00E-175ISS
GO:0010043GO-bp Annotation by Michelle Graham. GO Biological Process: response to zinc ion SoyBaseN/AISS
GO:0055114GO-bp Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process SoyBaseN/AISS
GO:0071281GO-bp Annotation by Michelle Graham. GO Biological Process: cellular response to iron ion SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0004497GO-mf Annotation by Michelle Graham. GO Molecular Function: monooxygenase activity SoyBaseN/AISS
GO:0005506GO-mf Annotation by Michelle Graham. GO Molecular Function: iron ion binding SoyBaseN/AISS
GO:0009055GO-mf Annotation by Michelle Graham. GO Molecular Function: electron carrier activity SoyBaseN/AISS
GO:0016705GO-mf Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen SoyBaseN/AISS
GO:0019825GO-mf Annotation by Michelle Graham. GO Molecular Function: oxygen binding SoyBaseN/AISS
GO:0020037GO-mf Annotation by Michelle Graham. GO Molecular Function: heme binding SoyBaseN/AISS
KOG0156 KOG Cytochrome P450 CYP2 subfamily JGI ISS
PTHR24298Panther FAMILY NOT NAMED JGI ISS
PTHR24298:SF44Panther JGI ISS
PF00067PFAM Cytochrome P450 JGI ISS
UniRef100_B9MVH7UniRef Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450 n=1 Tax=Populus trichocarpa RepID=B9MVH7_POPTR SoyBaseE_val: 0ISS
UniRef100_UPI0002339BC3UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339BC3 related cluster n=1 Tax=unknown RepID=UPI0002339BC3 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g03880
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03880
ParalogEvidenceComments
Glyma04g03780 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03880 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g035400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g03880
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g03880
>Glyma06g03880.1   sequence type=CDS   gene model=Glyma06g03880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACGCAGCAACGGGTGTTGGAGTTTGTGTCTTCCTATTAATTTCTTACATGGCGTTCTTAATCAAACGGGCTACAGCAGGTTCTGCTCGCAAGCCACCGGCAGCATCCGGTGGCTGGCCTTTGATCGGTCATCTTCACCTCTTGGGTGGCTCCGGTCAGCCTCTTTACGAAACCCTAGGAACGTTAGCAGACATGTATGGCCCAATATTCAGCATCCGAATTGGTGTTCACCCTGCCGTTGTGGTGAGCTCTTGGGAGTTAGCAAAAGAGTGTTTCACCACTCTTGACGTCACTGTCTCCTCTCGTCCCAAATTCACCGCCGCAAAAATCTTGACATACAACTATGCTAGTTTCGCGTTCGCCCCATACGGAGATTTCTGGCGCGATATGCACAAGATTACGGTTTCAGAGCTACTCTCCACTCGCCAGGCTGAAATGCTTCGAGGTATTAGAGATTCCGAGGTAAAGAGCTCGTTGAGAGAACTACAGAGAGCGTGGGCGGAGAAAAGAGGCGTGTCCTCTGGTGATTTGTTGGTGGAGATGAAGCAGTGGTTTGGAGAAATGAATCTGAACGTGATTCTGAGGATGGTTGCTGGAAAGCGATACTGTGTGGGGAGTGTAGATCAGGAACAGGCAAGGCGAGTTCGGGGGGTGCTGAGAGACTTCTTTCATTTGATGGGGTCGCTTGTGATTGGGGACGCGATTCCCTTTCTTGGGTGGCTTGATTTGGGAGGTGAAGTGAAGGAGATGAAAAAGACGGCTGTAGAAATAGATAACATCGTTTCTGAATGGTTAGAAGAACATAAGCAGCTGAGAAGAGATTCAAGTGAGGCCAAAACAGAGCAAGACTTCATGGGTGCGTTGCTGTCTGCACTTGACGGTGTCGACCTTGCTGGTTATGATGCTGACACTGTCATAAAAGCCACATGCTCAACGCTAATTGCTGCGGCAACGGATACTACAACTGTTACCATGATTTGGACACTATCGTTATTGTTGAATAATCGTCACGCCTTAAACAAAGTTCAAGATGAATTGGATGAGCATGTGGGCAAGGGAAGACTAGTGAATGAATCTGATATTAACAAATTAATATACCTTCAAGCCGTAGTTAAAGAAACGATGAGGTTGTATGCAGCTGCACCACTTCCAGGTCCACGTGAATTCACAAGTGAGTGTACCTTAGGTGGCTACCGTATCCAAGCAGGTACCAGATTTATTTTGAACATTTGGAAGATGCAGAGAGACCCACGTGTATGGTCAGACCCATTAGAATTTCAACCAGAAAGGTTCCTCACGAACCACAAGGGTGTGGATGTAAAAGGTCAACATTTTGAGCTACTTCCCTTTGGTGGTGGAAGAAGGTCTTGTCCTGGCATGTCATTTGCCCTTCAAATGACATACTTGGCATTAGCAACTTTTTTGCAGGCATTTGAAGTCACAACCTTGAACAATGAAAATGTTGACATGAGTGCCACATTTGGACTCACACTTATTAAAACCACACCACTAGAGGTTTTAGCCAAACCTCGTTTACCATATCAACTTTTCTTCACTGATGAAACTAAGGAAAATCCAACACATTCACCATGA
Predicted protein sequences of Glyma06g03880
>Glyma06g03880.1   sequence type=predicted peptide   gene model=Glyma06g03880   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDAATGVGVCVFLLISYMAFLIKRATAGSARKPPAASGGWPLIGHLHLLGGSGQPLYETLGTLADMYGPIFSIRIGVHPAVVVSSWELAKECFTTLDVTVSSRPKFTAAKILTYNYASFAFAPYGDFWRDMHKITVSELLSTRQAEMLRGIRDSEVKSSLRELQRAWAEKRGVSSGDLLVEMKQWFGEMNLNVILRMVAGKRYCVGSVDQEQARRVRGVLRDFFHLMGSLVIGDAIPFLGWLDLGGEVKEMKKTAVEIDNIVSEWLEEHKQLRRDSSEAKTEQDFMGALLSALDGVDLAGYDADTVIKATCSTLIAAATDTTTVTMIWTLSLLLNNRHALNKVQDELDEHVGKGRLVNESDINKLIYLQAVVKETMRLYAAAPLPGPREFTSECTLGGYRIQAGTRFILNIWKMQRDPRVWSDPLEFQPERFLTNHKGVDVKGQHFELLPFGGGRRSCPGMSFALQMTYLALATFLQAFEVTTLNNENVDMSATFGLTLIKTTPLEVLAKPRLPYQLFFTDETKENPTHSP*






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