Glyma06g03820 - SoyBase

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Report for Sequence Feature Glyma06g03820

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2681651
stop:	2684625
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g03820

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G48460	AT	Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G63040.1); Has 60 Blast hits to 60 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr1:17911469-17913149 FORWARD LENGTH=340	SoyBase	E_val: 5.00E-112	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005739	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: mitochondrion	SoyBase	N/A	ISS
GO:0009536	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plastid	SoyBase	N/A	ISS
GO:0009941	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast envelope	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1K7V1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7V1_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9LP79	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T1N15.7 n=1 Tax=Arabidopsis thaliana RepID=Q9LP79_ARATH	SoyBase	E_val: 3.00E-107	ISS

Expression Patterns of Glyma06g03820

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03820

Paralog	Evidence	Comments
Glyma04g03730	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03820 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g034900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g03820

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g03820

Limit To All Plant Sequences

>Glyma06g03820.2   sequence type=transcript   gene model=Glyma06g03820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GCGAATATAACAACGGGTTTTAGAAGCAGGGGATAGCCTCGCAAGCTCATAGTTCTAAAACCCTAAAGTGAGTGAGTGATGGAACTTCAGACCCTTTGTTGCGCTCTTCCCTCTCAACCACTTCACTTTTCCAATCATCGTATTCTATCAGTGAGTAAACCTTAACCGACACCTTCGAATCAATTTTTCTTTGTTACCATTCTAACCCTTCTCTGCAATTCCCGATTACTATTCACCAACTCGTTAATGTTATATTCGCAGTCACCAGCGTTTGGAACCCACGCTCCATTAACAAACCAAATTCATAGATTTCGGTTCGGAAACCCCTCAAAATGTTTAAAATGGGTGATTAAAGAGACTTCACTTTTGGGATTGAGCGAATCCAAGAAGCTTCTAGTACATGCTTCTGATTCCAATTTAAATGGTGGCTTGGAAGTTCATCCAAAACAAAGTTCTAGTGTACCCGTTACTACATTTAACGGGGTGGAACCGTTTCATGGTAAATCAGGTTCTGTCTCCTTTTGTGGCTTGACACACCAATCGGTAGAAGAAGGGAAATTGGAATCTTCCCCCTTTGGAGTAAAGGGTGGCTCTTTCTTGTGGGTCTTAGCTCCTGCTGCGTTCATAGCATCTTTGACTTTGCCACAGTTTTTTGTTGACAATGTGGTTGAAGCTTTCCTTAATAATGTGATGTTAATAGATATTGTGACTACATTCTCTCATGAGGTCCTGTTCTACATTGGACTGGCAACATTCTTGCATGTGACTGATCGTGTCCAGAGGCCGTATTTGCAGTACAGCTCAAAAAGATGGGGTCTTATCACTGGCCTCAGAGGATACCTATTCTCTGCTTTCTTCACCATGGGTTTGAAGATTATTGCTCCTCTCATTCTTTTGTTTGTGACCTGGTCAGCAATTCGCATTGCAGCATTTGTTGCTATAACTCCATTTTTAGTTGGCTGTGTTGCACAAATGGCATTTGAGAAAGCTTTGGACAATCGTGGGTCATCTTGCTGGCCTCTAGTCCCTGCTATATTTGAGGTATACAGACTGTATCAGCTTACAAAAGCTGCTAATTTTGCCGAGAAGTTGTTATTCTCTATGAAGGGGCTTCCTGCGAGTCCTGAATTGGCAGAACGAAGTGGAGCTTTGTTCGCAATGTTAATCACCTTCCAAGTACTAGGGATTGTGTGCCTTTGGTCATTGATGACTTTTCTTTTGAGGCTATTCCCTTCTAGACCTGTAGCAGATCATTACTGAGTTTATTGTGGATTAGGGAAGAGTGTTGTGAGCACTATTAGTATATTAACTTTAATGCAGGCTTTTCATTGAAATGTCTTGTCACCATCTCTTTCATTTTTTTTTTCTTAAGTACAATGCCGTCATTTACCGAGAAAATGAAGGTTGCAATCTTTGCAAGAA

Coding sequences of Glyma06g03820

Limit To All Plant Sequences

>Glyma06g03820.1   sequence type=CDS   gene model=Glyma06g03820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAACTTCAGACCCTTTGTTGCGCTCTTCCCTCTCAACCACTTCACTTTTCCAATCATCGTATTCTATCATCACCAGCGTTTGGAACCCACGCTCCATTAACAAACCAAATTCATAGATTTCGGTTCGGAAACCCCTCAAAATGTTTAAAATGGGTGATTAAAGAGACTTCACTTTTGGGATTGAGCGAATCCAAGAAGCTTCTAGTACATGCTTCTGATTCCAATTTAAATGGTGGCTTGGAAGTTCATCCAAAACAAAGTTCTAGTGTACCCGTTACTACATTTAACGGGGTGGAACCGTTTCATGGTAAATCAGGTTCTGTCTCCTTTTGTGGCTTGACACACCAATCGGTAGAAGAAGGGAAATTGGAATCTTCCCCCTTTGGAGTAAAGGGTGGCTCTTTCTTGTGGGTCTTAGCTCCTGCTGCGTTCATAGCATCTTTGACTTTGCCACAGTTTTTTGTTGACAATGTGGTTGAAGCTTTCCTTAATAATGTGATGTTAATAGATATTGTGACTACATTCTCTCATGAGGTCCTGTTCTACATTGGACTGGCAACATTCTTGCATGTGACTGATCGTGTCCAGAGGCCGTATTTGCAGTACAGCTCAAAAAGATGGGGTCTTATCACTGGCCTCAGAGGATACCTATTCTCTGCTTTCTTCACCATGGGTTTGAAGATTATTGCTCCTCTCATTCTTTTGTTTGTGACCTGGTCAGCAATTCGCATTGCAGCATTTGTTGCTATAACTCCATTTTTAGTTGGCTGTGTTGCACAAATGGCATTTGAGAAAGCTTTGGACAATCGTGGGTCATCTTGCTGGCCTCTAGTCCCTGCTATATTTGAGGTATACAGACTGTATCAGCTTACAAAAGCTGCTAATTTTGCCGAGAAGTTGTTATTCTCTATGAAGGGGCTTCCTGCGAGTCCTGAATTGGCAGAACGAAGTGGAGCTTTGTTCGCAATGTTAATCACCTTCCAAGTACTAGGGATTGTGTGCCTTTGGTCATTGATGACTTTTCTTTTGAGGCTATTCCCTTCTAGACCTGTAGCAGATCATTACTGA

>Glyma06g03820.2   sequence type=CDS   gene model=Glyma06g03820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTATATTCGCAGTCACCAGCGTTTGGAACCCACGCTCCATTAACAAACCAAATTCATAGATTTCGGTTCGGAAACCCCTCAAAATGTTTAAAATGGGTGATTAAAGAGACTTCACTTTTGGGATTGAGCGAATCCAAGAAGCTTCTAGTACATGCTTCTGATTCCAATTTAAATGGTGGCTTGGAAGTTCATCCAAAACAAAGTTCTAGTGTACCCGTTACTACATTTAACGGGGTGGAACCGTTTCATGGTAAATCAGGTTCTGTCTCCTTTTGTGGCTTGACACACCAATCGGTAGAAGAAGGGAAATTGGAATCTTCCCCCTTTGGAGTAAAGGGTGGCTCTTTCTTGTGGGTCTTAGCTCCTGCTGCGTTCATAGCATCTTTGACTTTGCCACAGTTTTTTGTTGACAATGTGGTTGAAGCTTTCCTTAATAATGTGATGTTAATAGATATTGTGACTACATTCTCTCATGAGGTCCTGTTCTACATTGGACTGGCAACATTCTTGCATGTGACTGATCGTGTCCAGAGGCCGTATTTGCAGTACAGCTCAAAAAGATGGGGTCTTATCACTGGCCTCAGAGGATACCTATTCTCTGCTTTCTTCACCATGGGTTTGAAGATTATTGCTCCTCTCATTCTTTTGTTTGTGACCTGGTCAGCAATTCGCATTGCAGCATTTGTTGCTATAACTCCATTTTTAGTTGGCTGTGTTGCACAAATGGCATTTGAGAAAGCTTTGGACAATCGTGGGTCATCTTGCTGGCCTCTAGTCCCTGCTATATTTGAGGTATACAGACTGTATCAGCTTACAAAAGCTGCTAATTTTGCCGAGAAGTTGTTATTCTCTATGAAGGGGCTTCCTGCGAGTCCTGAATTGGCAGAACGAAGTGGAGCTTTGTTCGCAATGTTAATCACCTTCCAAGTACTAGGGATTGTGTGCCTTTGGTCATTGATGACTTTTCTTTTGAGGCTATTCCCTTCTAGACCTGTAGCAGATCATTACTGA

Predicted protein sequences of Glyma06g03820

Limit To All Plant Sequences

>Glyma06g03820.1   sequence type=predicted peptide   gene model=Glyma06g03820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MELQTLCCALPSQPLHFSNHRILSSPAFGTHAPLTNQIHRFRFGNPSKCLKWVIKETSLLGLSESKKLLVHASDSNLNGGLEVHPKQSSSVPVTTFNGVEPFHGKSGSVSFCGLTHQSVEEGKLESSPFGVKGGSFLWVLAPAAFIASLTLPQFFVDNVVEAFLNNVMLIDIVTTFSHEVLFYIGLATFLHVTDRVQRPYLQYSSKRWGLITGLRGYLFSAFFTMGLKIIAPLILLFVTWSAIRIAAFVAITPFLVGCVAQMAFEKALDNRGSSCWPLVPAIFEVYRLYQLTKAANFAEKLLFSMKGLPASPELAERSGALFAMLITFQVLGIVCLWSLMTFLLRLFPSRPVADHY*

>Glyma06g03820.2   sequence type=predicted peptide   gene model=Glyma06g03820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLYSQSPAFGTHAPLTNQIHRFRFGNPSKCLKWVIKETSLLGLSESKKLLVHASDSNLNGGLEVHPKQSSSVPVTTFNGVEPFHGKSGSVSFCGLTHQSVEEGKLESSPFGVKGGSFLWVLAPAAFIASLTLPQFFVDNVVEAFLNNVMLIDIVTTFSHEVLFYIGLATFLHVTDRVQRPYLQYSSKRWGLITGLRGYLFSAFFTMGLKIIAPLILLFVTWSAIRIAAFVAITPFLVGCVAQMAFEKALDNRGSSCWPLVPAIFEVYRLYQLTKAANFAEKLLFSMKGLPASPELAERSGALFAMLITFQVLGIVCLWSLMTFLLRLFPSRPVADHY*

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