SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g03760

Feature Type:gene_model
Chromosome:Gm06
Start:2649985
stop:2651889
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g03760
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G19310AT Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein | chr1:6676424-6677104 REVERSE LENGTH=226 SoyBaseE_val: 2.00E-84ISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
KOG0823 KOG Predicted E3 ubiquitin ligase JGI ISS
PTHR12313Panther RNF5 JGI ISS
PF00097PFAM Zinc finger, C3HC4 type (RING finger) JGI ISS
UniRef100_B9R7P4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Rnf5, putative n=1 Tax=Ricinus communis RepID=B9R7P4_RICCO SoyBaseE_val: 2.00E-113ISS
UniRef100_I1K7U3UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7U3_SOYBN SoyBaseE_val: 4.00E-169ISS

Expression Patterns of Glyma06g03760
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03760
ParalogEvidenceComments
Glyma04g03680 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03760 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g034500 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g03760
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g03760
>Glyma06g03760.1   sequence type=CDS   gene model=Glyma06g03760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAAGTGGGTTTGGGGAATCAACAGGGAGGTCACCCCCAAGCCCTTCCTACTTCAACAACAATAATAACAGCGATGCTGCCAATTTTGAATGCAACATTTGCTTTGAATTAGCGCAAGACCCGATAATTACTTTGTGTGGTCATCTTTTCTGCTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCACAATCACGAGAATGCCCGGTGTGCAAGGCTCTCGTGGAGGAGGAGAAATTGGTTCCCTTGTATGGGAGAGGAAAGTCGTCCACTGATCCGAGATCAAAATCTATTCCGGGCGTTAACATCCCACATCGTCCGGCTGGGCAGAGGCCTGAAACTGCTCCTCCACCTGAAACAAATCATTTTCATCAACATGGGTTTGGATTTATGGGTGGCTTGGGGGGATTTGTGCCACCGCCGATGGCAACAACAAGATTTGGGAATTTTGCATTGTCCGCAGCATTTGGTGGTTTTATACCATCCTTATTCAACTTTCAGATGCATGGGTTTCATGATGCGGCCATGTATGGGGGAGGGGCTGGTTTTCCACATGGATTTGCTAATACATTTCATGGTGTCCATGCTCATGGATTCCCTCTGCGCACCCATCAAGGGCAACAAGATTATTATTTGAAGAAGCTGCTTCTATTTGTTGTTTTCTGTGTTGTTCTTGCTTTTATATGGCAATAG
Predicted protein sequences of Glyma06g03760
>Glyma06g03760.1   sequence type=predicted peptide   gene model=Glyma06g03760   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MASGFGESTGRSPPSPSYFNNNNNSDAANFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALVEEEKLVPLYGRGKSSTDPRSKSIPGVNIPHRPAGQRPETAPPPETNHFHQHGFGFMGGLGGFVPPPMATTRFGNFALSAAFGGFIPSLFNFQMHGFHDAAMYGGGAGFPHGFANTFHGVHAHGFPLRTHQGQQDYYLKKLLLFVVFCVVLAFIWQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo