Glyma06g03690 - SoyBase

SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g03690

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2582274
stop:	2585632
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g03690

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75090	AT	Annotation by Michelle Graham. TAIR10: DNA glycosylase superfamily protein \| chr1:28187647-28189612 REVERSE LENGTH=329	SoyBase	E_val: 1.00E-113	ISS
GO:0006281	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA repair	SoyBase	N/A	ISS
GO:0006284	GO-bp	Annotation by Michelle Graham. GO Biological Process: base-excision repair	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003824	GO-mf	Annotation by Michelle Graham. GO Molecular Function: catalytic activity	SoyBase	N/A	ISS
GO:0008725	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA-3-methyladenine glycosylase activity	SoyBase	N/A	ISS
PF03352	PFAM	Methyladenine glycosylase	JGI		ISS
UniRef100_B9R7Q5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: DNA-3-methyladenine glycosylase, putative n=1 Tax=Ricinus communis RepID=B9R7Q5_RICCO	SoyBase	E_val: 2.00E-123	ISS
UniRef100_I1K7T9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7T9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g03690

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03690

Paralog	Evidence	Comments
Glyma04g03600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03690 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g033900	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g03690

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g03690

Limit To All Plant Sequences

>Glyma06g03690.1   sequence type=CDS   gene model=Glyma06g03690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCCGTAGCCACGAAGCTTCGACCGGCTCCGCAACCGCGAGCTATCTTGAAACCTGCCGGAAATAGAGTAACCGTTTCCGAAGAACCCAAACCGAAGAAGGAGAACAACGTGAAGACTCCACAGCGTCCCCCGCAAATTCCCAACACCGTTTTGCAAAGCAACGTGTCTTTGAACAGCATGTGTTCCTCTGATTCATGTTCATCAACAACCAAAAACGCAACTGTGGCTGGTAGGAGAAACGTGAAGCGTAACGGGTTTAAGCCTGTAAGAGTTGTGCCAGATGCCGCCGATGTAGCAACCATATCGCCGCCTCTTAAGAGATGTGAATGGATCACTCCAAATTCTGACCCGTTTTACACTGCTTTCCATGATGAAGAATGGGGTGTTCCAGTTGATGATGATAGAAAGCTATTTGAGCTTCTAGTCTTTTCACAAGCATTGGCAGAACACCGTTGGCCAGCAATTCTTAAACAGAGAGACATATTCAGGAAGCTTTTTGAAAATTTTGAACCGTCATCAGTTGCTCAGTTTACTGATAAGAAATTGCTGACACTGAAGATAAACGGCAACTCATTGTTATCAGAACCAAAGATCCGTGCCATTGTGGAAAATGCTAAACAATTACCTAAGGTTCAGCAGGAGTTTGGTTCATTCAGCAATTACTGCTGGAGATTTGTTAACCACAAACCAATAAGAAATGAATTCAGATATGGACGTCAAGTACCCGTGAAGACTCCAAAAGCAGAAGTGATTAGCAAGGACATGATGCGCAGAGGTTTCCAATGTGTGGGACCAACTGTTGTTTATTCGTTCATGCAAGTAGCAGGGCTCGTTAATGACCACCTATTAACATGCTTCAGGTACCACGAATGCAAAGTGACAACCAAAACAGAATTTAAAACTGAGTTTAAGGAGAACAATGACTGA

Predicted protein sequences of Glyma06g03690

Limit To All Plant Sequences

>Glyma06g03690.1   sequence type=predicted peptide   gene model=Glyma06g03690   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPVATKLRPAPQPRAILKPAGNRVTVSEEPKPKKENNVKTPQRPPQIPNTVLQSNVSLNSMCSSDSCSSTTKNATVAGRRNVKRNGFKPVRVVPDAADVATISPPLKRCEWITPNSDPFYTAFHDEEWGVPVDDDRKLFELLVFSQALAEHRWPAILKQRDIFRKLFENFEPSSVAQFTDKKLLTLKINGNSLLSEPKIRAIVENAKQLPKVQQEFGSFSNYCWRFVNHKPIRNEFRYGRQVPVKTPKAEVISKDMMRRGFQCVGPTVVYSFMQVAGLVNDHLLTCFRYHECKVTTKTEFKTEFKENND*

Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA

U.S. Public Domain