SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g03630

Feature Type:gene_model
Chromosome:Gm06
Start:2547719
stop:2551056
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g03630
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G66730AT Annotation by Michelle Graham. TAIR10: C2H2-like zinc finger protein | chr5:26641914-26643883 REVERSE LENGTH=500 SoyBaseE_val: 5.00E-128ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0009937GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of gibberellic acid mediated signaling pathway SoyBaseN/AISS
GO:0010029GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of seed germination SoyBaseN/AISS
GO:0010431GO-bp Annotation by Michelle Graham. GO Biological Process: seed maturation SoyBaseN/AISS
GO:0005622GO-cc Annotation by Michelle Graham. GO Cellular Compartment: intracellular SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003676GO-mf Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0008270GO-mf Annotation by Michelle Graham. GO Molecular Function: zinc ion binding SoyBaseN/AISS
PTHR10593Panther SERINE/THREONINE-PROTEIN KINASE RIO JGI ISS
PF12171PFAM Zinc-finger double-stranded RNA-binding JGI ISS
UniRef100_B9R7R3UniRef Annotation by Michelle Graham. Most informative UniRef hit: Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9R7R3_RICCO SoyBaseE_val: 2.00E-151ISS
UniRef100_UPI0002339A68UniRef Annotation by Michelle Graham. Best UniRef hit: UPI0002339A68 related cluster n=1 Tax=unknown RepID=UPI0002339A68 SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g03630
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03630
ParalogEvidenceComments
Glyma04g03560 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03630 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g033300 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g03630
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g03630
>Glyma06g03630.2   sequence type=CDS   gene model=Glyma06g03630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGACGGAACCTCAGAATCCTTCACCATTGACACATTCTCCAGCGTTAGAAATCGCACCTCAAACTCAACCACTGCCACCTCCCAAAAAGAAACGAAACCTCCCTGGAATGCCAGATCCAGATGCTGAAGTGATTGCTTTGTCACCGAAGACGCTGTTGGCGACGAACCGTTTCGTGTGCGAGATCTGCAACAAAGGCTTCCAGCGCGACCAGAATCTACAGCTTCACCGACGCGGCCACAACTTGCCGTGGAAGCTGCGGCAGCGAGGGAGCAAAGAACCGCAGAAGAAAGCTTACGTGTGTCCCGAACCTTCCTGCGTCCACCACAACCCCGCAAGGGCGCTCGGCGACCTCACCGGCATCAAGAAGCACTTCTGCAGAAAACACGGTGAGAAAAAGTGGCAATGCGAACGCTGCTCTAAGAAATACGCCGTACACTCCGATTGGAAGGCTCATATGAAAACTTGCGGCACCAGAGAGTACCGATGCGACTGCGGCACCTTGTTCTCTAGGAGGGATAGTTTCATCACGCACAGAGCATTTTGCGATGTCTTAGCGCAAGAGAGCGCAAGGGCCCAGGACCAAGCCCAAGGTGGTAGCAGCAATAGCTACGTGGTTGTTGTGTCTTCTTCGCCGCCTACGCCTCCACTCACTCCCTCTGCGTCTGTGGTGTCTCCAACTTTGTCCATTCAGAGCTCAGAAATTCCGGAAAACCCATCAACGAAGGTGTCACCGACGTCTCCAAACGCATCGTGTTTCGTGACAAGCAGCAGCAGCACCCCCTCCAGTACCACCAGTGTTTTTGCAAGTGTTTTAGCACCGTCGACAACACCAACAACTCCTTCACAATCACCATCAAATTCAACTTGTTCATTCTCCAACCTCATGTCAAACTTGGCTCGTTCGGAAAACTCCAATGCCTTAATGAGAGAACCCACATCCCTCTCCCTCTCCACACCACCCTATCACTCCAACAATGACCCTCTTCATTACACTGCATTACCCCAACCTGCACTATCTGCCACTGCACTACTCCAGAAGGCAGCTCAGATGGGTGCTTCAAATGCATCCCTTCTTCGTGGATTAGGCTTAGCAAGAACATCCTCCTCCTTCGGGAAAGACGAGGGTGTTAACATTAATGCAACCACAACATTACAATGGAATGGCCAAGTGAAGCAAGAGAATCATCCAGTGGTGGATAACCTTGGGCTTGGGCTTCCATGTGGGAGTGGGAGTGTGCCAGATGTGATGATGGGCCCTACTACTCCATTTGTGGGCCAGCCCATGACCCGTGATCTTCTTGGTCTGAGCGTCGGTGGCGGGGCAACAAGCAGGGGTGGTCTCTCTGCTTTACTCACCTCTTTTGGAGGAAACTTTGATTCGCCGAGTGAGGGAGGAGTTCACCGGTAG
Predicted protein sequences of Glyma06g03630
>Glyma06g03630.2   sequence type=predicted peptide   gene model=Glyma06g03630   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MTEPQNPSPLTHSPALEIAPQTQPLPPPKKKRNLPGMPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRGSKEPQKKAYVCPEPSCVHHNPARALGDLTGIKKHFCRKHGEKKWQCERCSKKYAVHSDWKAHMKTCGTREYRCDCGTLFSRRDSFITHRAFCDVLAQESARAQDQAQGGSSNSYVVVVSSSPPTPPLTPSASVVSPTLSIQSSEIPENPSTKVSPTSPNASCFVTSSSSTPSSTTSVFASVLAPSTTPTTPSQSPSNSTCSFSNLMSNLARSENSNALMREPTSLSLSTPPYHSNNDPLHYTALPQPALSATALLQKAAQMGASNASLLRGLGLARTSSSFGKDEGVNINATTTLQWNGQVKQENHPVVDNLGLGLPCGSGSVPDVMMGPTTPFVGQPMTRDLLGLSVGGGATSRGGLSALLTSFGGNFDSPSEGGVHR*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo