Glyma06g03620 - SoyBase

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Report for Sequence Feature Glyma06g03620

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2528876
stop:	2537486
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g03620

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G45150	AT	Annotation by Michelle Graham. TAIR10: unknown protein; Has 219 Blast hits to 202 proteins in 78 species: Archae - 0; Bacteria - 166; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 17 (source: NCBI BLink). \| chr1:17077615-17082330 REVERSE LENGTH=643	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
UniRef100_I1K7S9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7S9_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9MAJ5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: F27F5.22 n=1 Tax=Arabidopsis thaliana RepID=Q9MAJ5_ARATH	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g03620

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03620

Paralog	Evidence	Comments
Glyma04g03550	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03620 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g033200	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g03620

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g03620

Limit To All Plant Sequences

>Glyma06g03620.2   sequence type=transcript   gene model=Glyma06g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAGTTACTACTCCCTATTAATATTGTTTCCCTTCCTTCTAATATCTGAATTGCCAACAAAACAAAGAGAAAAAATCTTCGTTACTCTCAAACAAAACAAAACGCGATCATTTCTCCGCCGTAGCAGAAGAACAAACTCCACGACTCCGTTATGGACAACTCCGGAAATCCTCAAGACGTGGTTGTGCCACCTGTTGAAGGTGTTGCTGGAGGCGGTACAGCTTATGGGTGGAATGATGGAGGCACACATGGCTTGAATGTCAAGGGACCAATTGACCCCACAGGAATTCCTACTAGGGATTTAGTGCATGTATGGTGCATGCCAAGCACAGCAAATGTTGGACCTCAAGATATGCCCAGACATTTGGAGCCTATAAACCTGCTGGCAGCTAGAAATGAGAGGGAGAGTGTGCAAATAGCTATCCGACCAAAGGTTTCATGGAGTGGTTCTAGTGTTGCAGGGACTGTGCAGATTCAGTGCAGTGACCTATGCTCCACATCAGGAGACAGACTGATTGTTGGGCAGTCGCTGCTGTTGCGGCGAGTGGTGCCAATTTTAGGTGTACCTGATGCTCTTGTTCCTGTTGATCTTCCAGTCAGTCAAATAAATCTATTTCCTGGGGAGACGACTGCTCTTTGGATATCCATTGATGTTCCAAGTTCTCAACCTCCAGGACAATATGAAGGAGAGATTGCCATTACTGCTATAAAAGCAGATGCAGAATCTCCTGTTCAAATTTTAAGCAAGGTTGAGAAACATCAGTTGTATAGGGACCTAAAGGGATGTCTTGACATTGTTGAGCCCATTGATGGAAAACCATTAGATGAAGTGGTTGAAAGGGTGAAATCTGCAACTACATCTTTAAGAAGAATTCTTCTGTCTCCATCATTTTCTGAATTCTTTTCAGATAATGGACCAGTAGATGTAATGGATGAGGATGCCATTTCAAGTCTCTCTATACGGATGAAGTTAAACCTGACTGTTTGGGAATTTGTACTTCCTGAAACTCCTTCACTCCCTGCTGTATTTGGTATATCTGATACTGTAATCGAGGATCGCTTTGGTGTTCAACAAGGGACAGCTGAGTGGTATGAGGCATTGGATCAACATTTCAAATGGCTTCTTCAATATAGAATCAGCCCTTATTTTTGTAAATGGGCTGATGGTATGCGTGTTTTGACATACACATCTCCATGGCCAGCGGACCATCCAAAGTCAGATGAATATTTTTCAGATCCACGGTTGGCAGCATATGCTGTACCATACAAACAAGTAGTTTCCGGTAATGATGCGGCGAAGGATTACTTGCAGAAACAAGTTGAGATATTGAGAACCAAGACTCACTGGAGGAAAGCTTACTTTTACTTGTGGGATGAGCCACTGAATTTGGAACAATATGATTCTGTTCGAAATATGGCCAGTGAGATTCATGCTTATGCTCCAGATGCTCGTATTTTAACTACTTACTATTGTGGACCAAATGATGCACCTCTTGCACCTACTCCATTCGAGGCTTTCGTAAAAGTTCCAAGTTTTCTGCGTCCTCATAATCAAATTTATTGTACAAGTGAATGGGTTCTGGGAAATCGAGAGGACCTGGTTAAGGATATTATTACTGAATTACAACCAGAGAATGGACATTGAGTACCTGAGACTCTATGCTTCAAGATACGGTAGGGACGAGAGTATTGCGCTTTTGGAGAGAACAGGAGTGTACTTCGGTCCTGAGCGTTACACATTTGAGCACATGCCAATTGATGCCATGAGAGGACAAATATTTAATGCCTGCCGTTCATGAATTGGTATGTTACAGAATATGGATGCTGCTTGGTCGAGTGGTTCATTTGTCAACAGCTTAAAAATTCAGGTTTCAGCATCTAAGTTTCAAAGATGCGACAATTGACAGTGATCGAGTGAGATCCGTGGAATATCACCCAAATGCTGCACAATTTGAACCTTGTAAATGTGGAATGTGACAGTGATATGGAATCTGAACCGTAGTTAGATGAGAAATCTGTTGTTCATTGCTGAAATGTGCCCTTCAACCGAACATAGGATCATAATCAAGTAGAGTTAATGTTGCAGTGTGAGAACATGCTTGATACGCGAGAGGAGTTAAACAAGACATTTAATTAATACTGTAAACTAGTTAAACTACGAGAAATTCTAATAATTAACTTACAGTATTCCTAGATGAGCATAGTGTGGGTCGCATTAAATCAGGGAAAGCTTAAGTTATTTAATGGATCTTCATAGAACTCATCAATGATAGAGTACTAGTAATATTGAAGAGAATGTTGAAGGCCATGTTTTTAGCAATCTTTACCTGGATATAGTTCGTCTATACTTATACATCCGATGTTAATTTCTTTTTAATTTGCGCGGAAGACGGTATATATTGATTGCCTTCGAGCTAG

Coding sequences of Glyma06g03620

Limit To All Plant Sequences

>Glyma06g03620.1   sequence type=CDS   gene model=Glyma06g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAACTCCGGAAATCCTCAAGACGTGGTTGTGCCACCTGTTGAAGGTGTTGCTGGAGGCGGTACAGCTTATGGGTGGAATGATGGAGGCACACATGGCTTGAATGTCAAGGGACCAATTGACCCCACAGGAATTCCTACTAGGGATTTAGTGCATGTATGGTGCATGCCAAGCACAGCAAATGTTGGACCTCAAGATATGCCCAGACATTTGGAGCCTATAAACCTGCTGGCAGCTAGAAATGAGAGGGAGAGTGTGCAAATAGCTATCCGACCAAAGGTTTCATGGAGTGGTTCTAGTGTTGCAGGGACTGTGCAGATTCAGTGCAGTGACCTATGCTCCACATCAGGAGACAGACTGATTGTTGGGCAGTCGCTGCTGTTGCGGCGAGTGGTGCCAATTTTAGGTGTACCTGATGCTCTTGTTCCTGTTGATCTTCCAGTCAGTCAAATAAATCTATTTCCTGGGGAGACGACTGCTCTTTGGATATCCATTGATGTTCCAAGTTCTCAACCTCCAGGACAATATGAAGGAGAGATTGCCATTACTGCTATAAAAGCAGATGCAGAATCTCCTGTTCAAATTTTAAGCAAGGTTGAGAAACATCAGTTGTATAGGGACCTAAAGGGATGTCTTGACATTGTTGAGCCCATTGATGGAAAACCATTAGATGAAGTGGTTGAAAGGGTGAAATCTGCAACTACATCTTTAAGAAGAATTCTTCTGTCTCCATCATTTTCTGAATTCTTTTCAGATAATGGACCAGTAGATGTAATGGATGAGGATGCCATTTCAAGTCTCTCTATACGGATGAAGTTAAACCTGACTGTTTGGGAATTTGTACTTCCTGAAACTCCTTCACTCCCTGCTGTATTTGGTATATCTGATACTGTAATCGAGGATCGCTTTGGTGTTCAACAAGGGACAGCTGAGTGGTATGAGGCATTGGATCAACATTTCAAATGGCTTCTTCAATATAGAATCAGCCCTTATTTTTGTAAATGGGCTGATGGTATGCGTGTTTTGACATACACATCTCCATGGCCAGCGGACCATCCAAAGTCAGATGAATATTTTTCAGATCCACGGTTGGCAGCATATGCTGTACCATACAAACAAGTAGTTTCCGGTAATGATGCGGCGAAGGATTACTTGCAGAAACAAGTTGAGATATTGAGAACCAAGACTCACTGGAGGAAAGCTTACTTTTACTTGTGGGATGAGCCACTGAATTTGGAACAATATGATTCTGTTCGAAATATGGCCAGTGAGATTCATGCTTATGCTCCAGATGCTCGTATTTTAACTACTTACTATTGTGGACCAAATGATGCACCTCTTGCACCTACTCCATTCGAGGCTTTCGTAAAAGTTCCAAGTTTTCTGCGTCCTCATAATCAAATTTATTGTACAAGTGAATGGGTTCTGGGAAATCGAGAGGACCTGGTTAAGGATATTATTACTGAATTACAACCAGAGAATGGTGAGGAGTGGTGGACATATGTCTGTATGGGACCATCAGATCCTCATCCAAATTGGCATCTTGGAATGCGAGGTACCCAACACCGCGCAGTCATGTGGCGTGTCTGGAAAGAGGGTGGCACAGGATTTTTGTACTGGGGAGCCAACTGCTATGAGAAGGCAACTGTAGCCAGTGCAGAGATAAAATTCAGGCATGGTCTTCCCCCTGGAGATGGAGTTCTATACTATCCTGGTGAGGTGTTCTCAACTTCTCATCAGCCAGTGGCTTCTCTTAGACTAGAGCGCATACTTAATGGCTTGCAGGACATTGAGTACCTGAGACTCTATGCTTCAAGATACGGTAGGGACGAGAGTATTGCGCTTTTGGAGAGAACAGGAGTGTACTTCGGTCCTGAGCGTTACACATTTGAGCACATGCCAATTGATGCCATGAGAGGACAAATATTTAATGCCTGCCGTTCATGA

>Glyma06g03620.2   sequence type=CDS   gene model=Glyma06g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGACAACTCCGGAAATCCTCAAGACGTGGTTGTGCCACCTGTTGAAGGTGTTGCTGGAGGCGGTACAGCTTATGGGTGGAATGATGGAGGCACACATGGCTTGAATGTCAAGGGACCAATTGACCCCACAGGAATTCCTACTAGGGATTTAGTGCATGTATGGTGCATGCCAAGCACAGCAAATGTTGGACCTCAAGATATGCCCAGACATTTGGAGCCTATAAACCTGCTGGCAGCTAGAAATGAGAGGGAGAGTGTGCAAATAGCTATCCGACCAAAGGTTTCATGGAGTGGTTCTAGTGTTGCAGGGACTGTGCAGATTCAGTGCAGTGACCTATGCTCCACATCAGGAGACAGACTGATTGTTGGGCAGTCGCTGCTGTTGCGGCGAGTGGTGCCAATTTTAGGTGTACCTGATGCTCTTGTTCCTGTTGATCTTCCAGTCAGTCAAATAAATCTATTTCCTGGGGAGACGACTGCTCTTTGGATATCCATTGATGTTCCAAGTTCTCAACCTCCAGGACAATATGAAGGAGAGATTGCCATTACTGCTATAAAAGCAGATGCAGAATCTCCTGTTCAAATTTTAAGCAAGGTTGAGAAACATCAGTTGTATAGGGACCTAAAGGGATGTCTTGACATTGTTGAGCCCATTGATGGAAAACCATTAGATGAAGTGGTTGAAAGGGTGAAATCTGCAACTACATCTTTAAGAAGAATTCTTCTGTCTCCATCATTTTCTGAATTCTTTTCAGATAATGGACCAGTAGATGTAATGGATGAGGATGCCATTTCAAGTCTCTCTATACGGATGAAGTTAAACCTGACTGTTTGGGAATTTGTACTTCCTGAAACTCCTTCACTCCCTGCTGTATTTGGTATATCTGATACTGTAATCGAGGATCGCTTTGGTGTTCAACAAGGGACAGCTGAGTGGTATGAGGCATTGGATCAACATTTCAAATGGCTTCTTCAATATAGAATCAGCCCTTATTTTTGTAAATGGGCTGATGGTATGCGTGTTTTGACATACACATCTCCATGGCCAGCGGACCATCCAAAGTCAGATGAATATTTTTCAGATCCACGGTTGGCAGCATATGCTGTACCATACAAACAAGTAGTTTCCGGTAATGATGCGGCGAAGGATTACTTGCAGAAACAAGTTGAGATATTGAGAACCAAGACTCACTGGAGGAAAGCTTACTTTTACTTGTGGGATGAGCCACTGAATTTGGAACAATATGATTCTGTTCGAAATATGGCCAGTGAGATTCATGCTTATGCTCCAGATGCTCGTATTTTAACTACTTACTATTGTGGACCAAATGATGCACCTCTTGCACCTACTCCATTCGAGGCTTTCGTAAAAGTTCCAAGTTTTCTGCGTCCTCATAATCAAATTTATTGTACAAGTGAATGGGTTCTGGGAAATCGAGAGGACCTGGTTAAGGATATTATTACTGAATTACAACCAGAGAATGGACATTGA

Predicted protein sequences of Glyma06g03620

Limit To All Plant Sequences

>Glyma06g03620.1   sequence type=predicted peptide   gene model=Glyma06g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNSGNPQDVVVPPVEGVAGGGTAYGWNDGGTHGLNVKGPIDPTGIPTRDLVHVWCMPSTANVGPQDMPRHLEPINLLAARNERESVQIAIRPKVSWSGSSVAGTVQIQCSDLCSTSGDRLIVGQSLLLRRVVPILGVPDALVPVDLPVSQINLFPGETTALWISIDVPSSQPPGQYEGEIAITAIKADAESPVQILSKVEKHQLYRDLKGCLDIVEPIDGKPLDEVVERVKSATTSLRRILLSPSFSEFFSDNGPVDVMDEDAISSLSIRMKLNLTVWEFVLPETPSLPAVFGISDTVIEDRFGVQQGTAEWYEALDQHFKWLLQYRISPYFCKWADGMRVLTYTSPWPADHPKSDEYFSDPRLAAYAVPYKQVVSGNDAAKDYLQKQVEILRTKTHWRKAYFYLWDEPLNLEQYDSVRNMASEIHAYAPDARILTTYYCGPNDAPLAPTPFEAFVKVPSFLRPHNQIYCTSEWVLGNREDLVKDIITELQPENGEEWWTYVCMGPSDPHPNWHLGMRGTQHRAVMWRVWKEGGTGFLYWGANCYEKATVASAEIKFRHGLPPGDGVLYYPGEVFSTSHQPVASLRLERILNGLQDIEYLRLYASRYGRDESIALLERTGVYFGPERYTFEHMPIDAMRGQIFNACRS*

>Glyma06g03620.2   sequence type=predicted peptide   gene model=Glyma06g03620   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDNSGNPQDVVVPPVEGVAGGGTAYGWNDGGTHGLNVKGPIDPTGIPTRDLVHVWCMPSTANVGPQDMPRHLEPINLLAARNERESVQIAIRPKVSWSGSSVAGTVQIQCSDLCSTSGDRLIVGQSLLLRRVVPILGVPDALVPVDLPVSQINLFPGETTALWISIDVPSSQPPGQYEGEIAITAIKADAESPVQILSKVEKHQLYRDLKGCLDIVEPIDGKPLDEVVERVKSATTSLRRILLSPSFSEFFSDNGPVDVMDEDAISSLSIRMKLNLTVWEFVLPETPSLPAVFGISDTVIEDRFGVQQGTAEWYEALDQHFKWLLQYRISPYFCKWADGMRVLTYTSPWPADHPKSDEYFSDPRLAAYAVPYKQVVSGNDAAKDYLQKQVEILRTKTHWRKAYFYLWDEPLNLEQYDSVRNMASEIHAYAPDARILTTYYCGPNDAPLAPTPFEAFVKVPSFLRPHNQIYCTSEWVLGNREDLVKDIITELQPENGH*

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