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Report for Sequence Feature Glyma06g03600

Feature Type:gene_model
Chromosome:Gm06
Start:2519723
stop:2520481
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g03600
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT2G18500AT Annotation by Michelle Graham. TAIR10: ovate family protein 7 | chr2:8027102-8028049 FORWARD LENGTH=315 SoyBaseE_val: 2.00E-25ISS
GO:0045892GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005886GO-cc Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane SoyBaseN/AISS
PF04844PFAM Protein of unknown function, DUF623 JGI ISS
UniRef100_I1K7S7UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7S7_SOYBN SoyBaseE_val: 1.00E-161ISS
UniRef100_Q8GSM4UniRef Annotation by Michelle Graham. Most informative UniRef hit: Ovate protein n=2 Tax=Solanum lycopersicum RepID=Q8GSM4_SOLLC SoyBaseE_val: 5.00E-28ISS

Expression Patterns of Glyma06g03600
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03600
ParalogEvidenceComments
Glyma04g03531 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03600 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g033000 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g03600
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g03600
>Glyma06g03600.2   sequence type=CDS   gene model=Glyma06g03600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCAAACGTTTCAAATTGAAGTTCAATATCCCTTCGTTTCAAATGTGTCGCTCAAAAGACCTTTCCTCTTTCCCTGGAAACCCCGTTCCTGCCATATACCGTCTTTCACCCGTTAACCACAACGCACGTGACACAAAGCATCCAAGCCTTCTTCCTTCTCCTTCTCCGTCACCGTCAAAGATAACGTCCATCGCGCAGAGATGCAAAATGTGCTGCGACAAGGACAGTTTGAAGAAACTGAAATCCAGCGTTCCGTCGAGGCGAAGCGATTTTCTGATCGACAACGTCGAGGAAGACGAAAGCGAGACTCTGATTTCTTGCATGACAAGTTTCTCCGACGAGTTTTGTCTCGGCGAGGAGAAGGATTTGAGTAGTAGTAGCAGCCTGAGAAGGAAGAAGATGGGCAGCGTAAAGAAGGTTCGGAGGGTGAGGTTTCAGAGTTCGGAGAAACGGAGAGGAACGGAGGTGAAGAAGACGACGGTGACGAGGAGAAGTGTGGAGGGGAAGGTGAAGGAGAGCTTCGCGGTGGTGAAGAAGTCGAAGGATCCTTATGAAGACTTCAGGAAATCGATGATGGAGATGATAACGGAGATGGAGATGTCTGAGGCCGAAGATTTGGAGCAGCTTTTGCAGTGTTTCTTGGCTTTGAACTCGCGGAGTTATCATGCAGTTATTGTGCGGGCTTTCATGGAGATTTGGCAACAAATGTTCGTAATGAAAAATCTCCAAACGAACGTTAAAACTCAGGAAAAGTAA
Predicted protein sequences of Glyma06g03600
>Glyma06g03600.2   sequence type=predicted peptide   gene model=Glyma06g03600   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKRFKLKFNIPSFQMCRSKDLSSFPGNPVPAIYRLSPVNHNARDTKHPSLLPSPSPSPSKITSIAQRCKMCCDKDSLKKLKSSVPSRRSDFLIDNVEEDESETLISCMTSFSDEFCLGEEKDLSSSSSLRRKKMGSVKKVRRVRFQSSEKRRGTEVKKTTVTRRSVEGKVKESFAVVKKSKDPYEDFRKSMMEMITEMEMSEAEDLEQLLQCFLALNSRSYHAVIVRAFMEIWQQMFVMKNLQTNVKTQEK*






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