Glyma06g03466 - SoyBase

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Report for Sequence Feature Glyma06g03466

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2420661
stop:	2422556
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g03466

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
KOG1176	KOG	Acyl-CoA synthetase	JGI		ISS
PTHR22754	Panther	DISCO-INTERACTING PROTEIN 2 (DIP2)-RELATED	JGI		ISS
PTHR22754:SF4	Panther	ACYL-COA SYNTHETASE-RELATED	JGI		ISS
PF00501	PFAM	AMP-binding enzyme	JGI		ISS
UniRef100_A5AZE1	UniRef	Annotation by Michelle Graham. Best UniRef hit: Putative uncharacterized protein n=1 Tax=Vitis vinifera RepID=A5AZE1_VITVI	SoyBase	E_val: 0	ISS
UniRef100_Q688U4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: 10A19I.5 n=1 Tax=Oryza sativa Japonica Group RepID=Q688U4_ORYSJ	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g03466

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g03466 not represented in the dataset	Glyma06g03466 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03466

Paralog	Evidence	Comments
Glyma04g03381	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03466 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g031600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g03466

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g03466

Limit To All Plant Sequences

>Glyma06g03466.1   sequence type=CDS   gene model=Glyma06g03466   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCCATACAAGTACGAGAATTATGACCCCTCATTCCCCGACCAACCCGTGGTTGACTTATACCTCCCAGTTTGGGCCAGGTTACCTGCCTTCAAGTCCAAGCCAGCTTTCATTTGGGCACAAGACTTGCACACCTTCACTGCTCTCACCTACCAACAACTTAACGCCACAGTTGATGTCATCTCCTCTCGACTACTCGCTCCGTTACAACGAGGTGACACTGTTCTTCTTCTTTGCTCTCCTGGACTTGACCTAGTTGAGCTCATCTTTGCGTGTCAAAGAGCTGGTCTTTTGAGCGTTCCCATCATCCCTCCTCACCCTTCTTTTGCTAAAGAAAACTATCACCATCTCATAAGAGCCATTTCGCAGACCAAACCCAAAGCTGCCCTAGCTCACCCTCACTACATATCAAGCATTAGACAATACGTGTCTTCCCCCCACAACAACAAGAAACTTGCTCACATGTTACATAGCATCCACTGGATTTCCGTAGACGAACTCAAACATCATCATGGTGTTGTTACTTTAAATAATCTTGATTCACTGACATACAGTGGTTGCAAAGCGAATGAAGTTTACTTGGTTCAGTACACGTCTGGTGCCACTGGGGTTCCAAAACCCGTGCTTGTCACAGCGGGCTCAGCTGCTCACAACGTTAGAACAGCGAGAAAAGCTTACGATCTTCATCCCAACAGCACAATCGTTTCGTGGCTGCCTCAGTATCATGATTGTGGTCTCATGTTCTTGTTGCTGACCCTTGTATCAGGAGCCACGTGTGTTCTCACTTCCCCAACGGCGTTCATCAAACGCCCCAGACTCTGGCTTGAACTCTTGTCGAAATTCAAGGCCACGTGCACTCCCGTTCCCTCGTTCACATTGCCACTCGTGGTCAAACGAGGAGGAATTCACCAAGGAGCTTCTACTTCATCCATCAACCTTTCAACTTTGAAGAATCTCATAATCATCAACGAGCCCGTCTATAGAGACTCAGTGGAAGAATTTGTTCACACTTTTTCTCCATTTGGGTTAAGCCCTTCTTCTATCTCTCCTTCCTACGGGTTAGCAGAGAATTGCACCTTTGTGTCCACTGCGTGGAGGAGCGTTAATAGTGATCATAATGATAGTGTTGGTGCCTATTATTCTTCAAGCTTCCCAGATTTTCCCACTCACAACAAGCTCTTACCAGTTGCAAGGCTCGAAAACGTGGAAGAGGAAGACGTGGAGATTATGGTTGTTGATGAAGAAACGTTGGAGCCAGCTGAGGATGGTGTTGAAGGAGAAATTTGGGTTGCTTCACCAAGCAACGCTTCTGGGTACCTTGGCCACCCTAGTTTAACAAGAGAAGTGTTTCATGGAAGACTAAGAAACATGATTAGCAAGTGCTTTCTTCGAACTGGGGACAGAGGCATAGTGAAAGGAGAAAAAAGATATCTTTTTGTCACTGGTCGCTGTCAAGACGTTATGGAACTCCGAAATGGTCGAAAGGTTCATCCACATTACATAGAAACTGCGGCTTATAACAGTTGCCCCAAGTTACTGAGAGGAGGTTGTCTTGCAGCGTTTAAAGTTTCATCAACGGTGGTGGTTGTGGCAGAGATGCAGAGGATCGAAAAGGGTATAGAAAAAGGTGTGTTGAAGAGGATTTGCGAGGGAGTTAAAGAAGCTGTTTGGAAGAAAGAGAAGGTGGAGGTTGGATGGGTGGTTTTGGTTGAGAGTGAGTGTGTTCCGAAAACCACTTCTGGGAAATTGATAAGAGGGAAGGCTAAGGAGAAGCTTCTTGCAGGGGAAATGGTGATTCTGATGAAGATGCGGTTTGGAAAAGATGTTACTGTTTTTAAGAGAGCAAAGAAGGTAACTGGTTCAATTTTATTTGCAGAAGCTCGTAGCTCATTATAA

Predicted protein sequences of Glyma06g03466

Limit To All Plant Sequences

>Glyma06g03466.1   sequence type=predicted peptide   gene model=Glyma06g03466   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MPYKYENYDPSFPDQPVVDLYLPVWARLPAFKSKPAFIWAQDLHTFTALTYQQLNATVDVISSRLLAPLQRGDTVLLLCSPGLDLVELIFACQRAGLLSVPIIPPHPSFAKENYHHLIRAISQTKPKAALAHPHYISSIRQYVSSPHNNKKLAHMLHSIHWISVDELKHHHGVVTLNNLDSLTYSGCKANEVYLVQYTSGATGVPKPVLVTAGSAAHNVRTARKAYDLHPNSTIVSWLPQYHDCGLMFLLLTLVSGATCVLTSPTAFIKRPRLWLELLSKFKATCTPVPSFTLPLVVKRGGIHQGASTSSINLSTLKNLIIINEPVYRDSVEEFVHTFSPFGLSPSSISPSYGLAENCTFVSTAWRSVNSDHNDSVGAYYSSSFPDFPTHNKLLPVARLENVEEEDVEIMVVDEETLEPAEDGVEGEIWVASPSNASGYLGHPSLTREVFHGRLRNMISKCFLRTGDRGIVKGEKRYLFVTGRCQDVMELRNGRKVHPHYIETAAYNSCPKLLRGGCLAAFKVSSTVVVVAEMQRIEKGIEKGVLKRICEGVKEAVWKKEKVEVGWVVLVESECVPKTTSGKLIRGKAKEKLLAGEMVILMKMRFGKDVTVFKRAKKVTGSILFAEARSSL*

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