Glyma06g03463 - SoyBase

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Report for Sequence Feature Glyma06g03463

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2417802
stop:	2419045
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g03463

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_C5LBW0	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: GRA11, putative n=1 Tax=Perkinsus marinus ATCC 50983 RepID=C5LBW0_PERM5	SoyBase	E_val: 1.00E-07	ISS
UniRef100_I1JTA4	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=1 Tax=Glycine max RepID=I1JTA4_SOYBN	SoyBase	E_val: 7.00E-13	ISS

Expression Patterns of Glyma06g03463

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g03463 not represented in the dataset	Glyma06g03463 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03463

Paralog	Evidence	Comments
Glyma04g03371	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03463 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g031500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g03463

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g03463

Limit To All Plant Sequences

>Glyma06g03463.1   sequence type=CDS   gene model=Glyma06g03463   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCGAAGATATCATTTGTTTTGGTATTTGCATTTGTGTTGTTGGCTCTGCCATTATGTTCAGTTTTGGGCCAAGAAGATTGGAAGGATCTCCTGGACCAAGGAGGGTTCTCTCAAGATTCTTTGAAAAAGGCCCAGATGGCTTTTGGTGCTGCTTCTGCCCAAGCAGCTGTCAATGATTATTTTGGAGGTGACGACTCTCCTCAGGAAGCCGATGATGGAGAAGCTTCATCCTTGGCTGACTTTTTAGACGCTGACGAAATAACAAACAACAACCCCATAGATTCACCGGTTGGAGCACCAGAAGATTTACCTGTAGATGACATTGACGATCCGGATGATTCTTTCTCACCTGCTGGTGCACCACTAAATTCGCCCAATGAAGCACCAAGCAATGCACCAGTGGTAGCACCAGCAAGTGGTGCACCAATAGAAGCACCTGAATTGGCACCAACAACAAATGCACCTGGACAAGCGCCTACAGATGAAGAGGATGAGGAAGATGAATTGACACCTACAAATGCACCTACCGAGGAACCAGATGATGAAGACGAGTTTGATGACTCTCCATCAGAACCTCCCACAGAGACGCCTGAAGCGGAACCCGCAGACGAGAGTGATGATGAATCATAA

Predicted protein sequences of Glyma06g03463

Limit To All Plant Sequences

>Glyma06g03463.1   sequence type=predicted peptide   gene model=Glyma06g03463   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAKISFVLVFAFVLLALPLCSVLGQEDWKDLLDQGGFSQDSLKKAQMAFGAASAQAAVNDYFGGDDSPQEADDGEASSLADFLDADEITNNNPIDSPVGAPEDLPVDDIDDPDDSFSPAGAPLNSPNEAPSNAPVVAPASGAPIEAPELAPTTNAPGQAPTDEEDEEDELTPTNAPTEEPDDEDEFDDSPSEPPTETPEAEPADESDDES*

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