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Report for Sequence Feature Glyma06g03460

Feature Type:gene_model
Chromosome:Gm06
Start:2415136
stop:2416577
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g03460
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G75250AT Annotation by Michelle Graham. TAIR10: RAD-like 6 | chr1:28244463-28245453 REVERSE LENGTH=97 SoyBaseE_val: 1.00E-24ISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0009507GO-cc Annotation by Michelle Graham. GO Cellular Compartment: chloroplast SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
PTHR25040Panther FAMILY NOT NAMED JGI ISS
PTHR25040:SF29Panther SUBFAMILY NOT NAMED JGI ISS
PF00249PFAM Myb-like DNA-binding domain JGI ISS
UniRef100_C6TL35UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6TL35_SOYBN SoyBaseE_val: 3.00E-55ISS
UniRef100_Q1A173UniRef Annotation by Michelle Graham. Most informative UniRef hit: Protein RADIALIS-like 6 n=1 Tax=Arabidopsis thaliana RepID=RADL6_ARATH SoyBaseE_val: 6.00E-22ISS

Expression Patterns of Glyma06g03460
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03460
ParalogEvidenceComments
Glyma04g03360 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03460 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g031400 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g03460
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g03460
>Glyma06g03460.1   sequence type=CDS   gene model=Glyma06g03460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTGGACACGAGAAGAGAATAGACGTTTTGAGGATGCTCTTGCGGTTCATGGGCCTGATGACCCAAATCGGTGGCAACATGTGGCCAACGCCGTGGGTGGAAAGTCCGTACAAGAGGTGAAAATGCACTATGAGATCCTCCAGGAAGATGTCATTCGAATAGAGCGTGATCAAATCCCACTTCCCAGCTACAGAGGTAACGAAAGGCAGATTCACAATGAGCAAAGGCGAATGAGGGATCTAAGTCTCCGATGA
Predicted protein sequences of Glyma06g03460
>Glyma06g03460.1   sequence type=predicted peptide   gene model=Glyma06g03460   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGWTREENRRFEDALAVHGPDDPNRWQHVANAVGGKSVQEVKMHYEILQEDVIRIERDQIPLPSYRGNERQIHNEQRRMRDLSLR*






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