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Integrating Genetics and Genomics to Advance Soybean Research


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Report for Sequence Feature Glyma06g03430

Feature Type:gene_model
Chromosome:Gm06
Start:2407271
stop:2408495
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g03430
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G19530AT Annotation by Michelle Graham. TAIR10: unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: leaf apex, inflorescence meristem, hypocotyl, root, flower; EXPRESSED DURING: petal differentiation and expansion stage; Has 47 Blast hits to 47 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:6763976-6764686 FORWA SoyBaseE_val: 4.00E-20ISS
GO:0006499GO-bp Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation SoyBaseN/AISS
GO:0009061GO-bp Annotation by Michelle Graham. GO Biological Process: anaerobic respiration SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_B4YYB7UniRef Annotation by Michelle Graham. Most informative UniRef hit: ST225 n=1 Tax=Eutrema halophilum RepID=B4YYB7_THEHA SoyBaseE_val: 4.00E-20ISS
UniRef100_C6SYN8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=C6SYN8_SOYBN SoyBaseE_val: 2.00E-96ISS

Expression Patterns of Glyma06g03430
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g03430 not represented in the dataset
Glyma06g03430 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g03430 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g031100 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g03430
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g03430
>Glyma06g03430.1   sequence type=CDS   gene model=Glyma06g03430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGTTCTCTTATGGCAGGATGGGACTCTCTGACCTTGGATCCTGAATCAGCTACAATTGAGAGGAATCGATCTCTCACCAAAGAGGAAATTAATGCTTTCTGGAAAACAAAGAAGGAGGCCGAGTTAGAACACCTCAAAGCTCTTTCCAAATTATCTGAGACTATTCGGGCCCGCAAATGCGAGTATTCAGAAAATTCTCACAGGTCAAGTACCGCGACCGTGGCCTTAGGCATGGATGGTGACAAAAAAAGTTTGGAGAATCTTATCAAGAAAAATTGCTGGTGGACCAAGAGCAGCTGGGCATTTCTGAATGAACCGCCAGTTATAGAAGCTGCTTCCAACAAGTATGCTTCACAGTTTCAAGTGGCCAACTTGGGATCAACGAAATTTAACCCCGGAGATGGAATTAGTGCTTGA
Predicted protein sequences of Glyma06g03430
>Glyma06g03430.1   sequence type=predicted peptide   gene model=Glyma06g03430   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSLMAGWDSLTLDPESATIERNRSLTKEEINAFWKTKKEAELEHLKALSKLSETIRARKCEYSENSHRSSTATVALGMDGDKKSLENLIKKNCWWTKSSWAFLNEPPVIEAASNKYASQFQVANLGSTKFNPGDGISA*






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