Glyma06g03395 - SoyBase

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Report for Sequence Feature Glyma06g03395

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2394862
stop:	2396080
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g03395

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
UniRef100_UPI00023381BE	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023381BE related cluster n=1 Tax=unknown RepID=UPI00023381BE	SoyBase	E_val: 3.00E-91	ISS

Expression Patterns of Glyma06g03395

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g03395 not represented in the dataset	Glyma06g03395 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03395

Paralog	Evidence	Comments
Glyma04g03321	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03395 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g030800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g03395

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g03395

Limit To All Plant Sequences

>Glyma06g03395.1   sequence type=CDS   gene model=Glyma06g03395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGAAATTGCTCTATTTTTCCAAACAAATGACTGAAAGAACTCTAGTTCCAATATTCGTCTTTTGGGCTTTCCTTACAATAATCACCCCTACACTCATTCTCTTGTCAGAGAATTCAAAGGTTGACCTCGATCCAAATGGAAATATAACTGAAGGAGTGAAGCTTGGACGAATGATCGGGTACACTCATAATTATAGCATAAAAACAGCATCACCGCTAGCCAAGTCTGAAGAGGAACTGGCCTCGGCACCAGCCCCAGAACCATTACCAACCTCATCATCTGGAACTAGTACTAATAGAGTTACTCCTATGGGGTCACACTCACATCATAATCATACTCTTATAAGAAATAAAACCCATGATGGGTTTAACCTCTCCTCTCCCATCAAGATACACGCCCAAGTCAAACAAGCATATATCAGATAG

Predicted protein sequences of Glyma06g03395

Limit To All Plant Sequences

>Glyma06g03395.1   sequence type=predicted peptide   gene model=Glyma06g03395   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MKLLYFSKQMTERTLVPIFVFWAFLTIITPTLILLSENSKVDLDPNGNITEGVKLGRMIGYTHNYSIKTASPLAKSEEELASAPAPEPLPTSSSGTSTNRVTPMGSHSHHNHTLIRNKTHDGFNLSSPIKIHAQVKQAYIR*

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