Glyma06g03361 - SoyBase

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Report for Sequence Feature Glyma06g03361

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2379043
stop:	2383638
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g03361

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75330	AT	Annotation by Michelle Graham. TAIR10: ornithine carbamoyltransferase \| chr1:28266457-28268383 REVERSE LENGTH=375	SoyBase	E_val: 0	ISS
GO:0006164	GO-bp	Annotation by Michelle Graham. GO Biological Process: purine nucleotide biosynthetic process	SoyBase	N/A	ISS
GO:0006520	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellular amino acid metabolic process	SoyBase	N/A	ISS
GO:0048481	GO-bp	Annotation by Michelle Graham. GO Biological Process: ovule development	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0009570	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast stroma	SoyBase	N/A	ISS
GO:0016597	GO-mf	Annotation by Michelle Graham. GO Molecular Function: amino acid binding	SoyBase	N/A	ISS
GO:0016743	GO-mf	Annotation by Michelle Graham. GO Molecular Function: carboxyl- or carbamoyltransferase activity	SoyBase	N/A	ISS
KOG1504	KOG	Ornithine carbamoyltransferase OTC/ARG3	JGI		ISS
PTHR11405	Panther	CARBAMOYLTRANSFERASE RELATED	JGI		ISS
PTHR11405:SF1	Panther	CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN	JGI		ISS
PF00185	PFAM	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain	JGI		ISS
PF02729	PFAM	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain	JGI		ISS
UniRef100_I1K7Q6	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7Q6_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q9SEX4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ornithine carbamoyltransferase n=1 Tax=Canavalia lineata RepID=Q9SEX4_CANLI	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g03361

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g03361 not represented in the dataset	Glyma06g03361 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03361

Paralog	Evidence	Comments
Glyma04g03276	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03361 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g030600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g03361

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g03361

Limit To All Plant Sequences

>Glyma06g03361.1   sequence type=CDS   gene model=Glyma06g03361   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCTGTGATCCCGTGTCACTGTTACCGTTCCGTCGGATCCGACAAACCCTACCTCTCTGGTCAGAGTCTCCGCCGTTGCGCTCCTTCCCCCGCCGTCTCCGTTTCATTTCGACGCCGAATATCATGCGTCGCCTCTTCCGCTGTCGCTCAGAAAGTTGGGCTGAAAGATTTTCTTCACTTGGATGATTTTGATAAGGATACTATTTTGAAGATGTTGGACCGGGCCCTTGAGGTCAAGGCATTGCTGAAGTCAGGGGACAGGTCATTTCGGCCTTTTGAGGGGAAGACAATGGCAATGATATTTACAAAGCCGTCCATGAGAACACGTGTTTCGTTCGAGACTGGCTTTACATTGTTAGGTGGCCATGCTATATATTTAGGACCCGATGACATCCAAATGGGCAAGCGAGAGGAGACTCGTGACATTGCTCGTGTTTTGTCTCGCTATAATGACATCATTATGGCTCGTGTTTTTGCTCATAAGGACATACTTGATCTTGCAAAATATGCTACTGTGCCAGTCATCAATGGGTTGACAGACTACAACCATCCCTGCCAGATAATGGCTGATGCCCTTACCATGGTTGAGCACATAGGTCGGTTTGAAGGTACAAAGGTGGTCTACATTGGAGATGGAAATAATATTGTTCACTCATGGTTGTTGATGGCATCTGTAATTCCCTTTCACTTCGTCTGTGCATGTCCAAAAGGATTTGAACCCGATGCAAAAACAGTTGAGAAGGCAAGGAAAGCTGGAATCAGCAAGATTGAGATAACCAATGATCCCAAAGAAGCTGTTAAAGGAGCTGATGTTGTGTATTCAGATGTCTGGGCCAGCATGGGGCAAAAGGAAGAAGCTGAATACCGTCGCCAAGTTTTTAAAGGATTTCAGGTGAACCAAAATCTTATGGATTTGGCCGGTTCAAAGGCATTTTTTATGCACTGCTTACCCGCGGAAAGAGGGGTGGAGGTGACTGACGAAGTTATTGAAGCTCCAAATTCAATAGTCTTCCCACAAGCTGAGAACCGAATGCATGCACAGAATGCTGTAATGCTTCATGTACTTGGCAAGTAA

Predicted protein sequences of Glyma06g03361

Limit To All Plant Sequences

>Glyma06g03361.1   sequence type=predicted peptide   gene model=Glyma06g03361   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAVIPCHCYRSVGSDKPYLSGQSLRRCAPSPAVSVSFRRRISCVASSAVAQKVGLKDFLHLDDFDKDTILKMLDRALEVKALLKSGDRSFRPFEGKTMAMIFTKPSMRTRVSFETGFTLLGGHAIYLGPDDIQMGKREETRDIARVLSRYNDIIMARVFAHKDILDLAKYATVPVINGLTDYNHPCQIMADALTMVEHIGRFEGTKVVYIGDGNNIVHSWLLMASVIPFHFVCACPKGFEPDAKTVEKARKAGISKIEITNDPKEAVKGADVVYSDVWASMGQKEEAEYRRQVFKGFQVNQNLMDLAGSKAFFMHCLPAERGVEVTDEVIEAPNSIVFPQAENRMHAQNAVMLHVLGK*

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