Glyma06g03340 - SoyBase

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Report for Sequence Feature Glyma06g03340

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2363411
stop:	2369043
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g03340

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G27680	AT	Annotation by Michelle Graham. TAIR10: ADPGLC-PPase large subunit \| chr1:9631630-9634450 FORWARD LENGTH=518	SoyBase	E_val: 0	ISS
GO:0009058	GO-bp	Annotation by Michelle Graham. GO Biological Process: biosynthetic process	SoyBase	N/A	ISS
GO:0019252	GO-bp	Annotation by Michelle Graham. GO Biological Process: starch biosynthetic process	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0008878	GO-mf	Annotation by Michelle Graham. GO Molecular Function: glucose-1-phosphate adenylyltransferase activity	SoyBase	N/A	ISS
GO:0016779	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleotidyltransferase activity	SoyBase	N/A	ISS
KOG1322	KOG	GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase	JGI		ISS
PTHR22572	Panther	SUGAR-1-PHOSPHATE GUANYL TRANSFERASE	JGI		ISS
PTHR22572:SF10	Panther	GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE	JGI		ISS
PF00483	PFAM	Nucleotidyl transferase	JGI		ISS
UniRef100_I3S8A5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Glucose-1-phosphate adenylyltransferase n=1 Tax=Lotus japonicus RepID=I3S8A5_LOTJA	SoyBase	E_val: 0	ISS
UniRef100_UPI000170AD44	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI000170AD44 related cluster n=1 Tax=unknown RepID=UPI000170AD44	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g03340

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03340

Paralog	Evidence	Comments
Glyma04g03260	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03340 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g030400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g03340

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g03340

Limit To All Plant Sequences

>Glyma06g03340.1   sequence type=CDS   gene model=Glyma06g03340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGATTCAGCTTGTGCAACCCTGAATGGCCGCCATCTAGCCAAAGTTAGTGAGGGAATTGGAAGAAACAGAACAAGTGGCTTCTGGGGTGAGAGTACGAGGGGAAGTGTGAACACAAAAAGGTTTTTGAGTGTTCAATCATGCAAGACTTCACGAACCAATAGGAATCTTAGAAACTCCAAGCCTGGAAGTGGAATTGCACGCGCTGTTCTCACATCAGACATCGACGAAGATTCCATGGCATTTCAAGGGGTACCCACTTTTGAGAAACCTGAAGTGGACCCAAAAAGTGTGGCTTCCATCATATTGGGTGGAGGTGCAGGAACTCGACTCTTTCCTCTTACTGGCAGAAGAGCCAAGCCAGCGGTTCCAATTGGAGGGTGTTATAGACTCATAGATATCCCCATGAGCAATTGCATCAATAGTGGCATCAGAAAAATTTTCATCTTGACGCAGTTCAATTCTTTCTCTCTCAACCGCCACCTGTCCCGTGCATACAGCTTCGGAAATGGCATGACTTTTGGAGATGGGTTTGTGGAGGTCTTGGCAGCTACTCAAACACCGGGTGAGGCTGGGAAGAAGTGGTTCCAAGGGACAGCTGATGCTGTAAGACAATTTATATGGGTTTTTGAGGATGCCAAGAACAAGAATGTTGAGCATATATTGATACTTTCTGGCGATCATCTTTACCGTATGGACTATATGGACTTTGTACAGAGACATGTTGACACAAATGCCGATATCACAGTTTCATGTGTACCCATGGATGACAGTCGGGCATCAGACTATGGACTGATGAAAATTGATAAAACAGGACGGATTATACAGTTTGCAGAAAAACCTAAGGGATCAGATCTAAAGGCAATGCGTGTTGACACCACTCTTTTAGGGTTATTGCCACAAGAAGCAGAAAAACATCCTTATATTGCATCCATGGGTGTCTACGTGTTTAGAACTGAAACCTTGCTGCAACTATTAAGATGGAAATGTTCTTCATGCAATGACTTTGGATCTGAAATTATCCCATCTGCTGTGAATGAGCACAATGTCCAGGCATATTTGTTCAATGACTACTGGGAAGATATTGGAACTATAAAGTCCTTCTTTGATGCAAATCTTGCTCTAACAGAACAGCCTCCTAAATTTGAATTCTATGATCCAAAGACACCTTTCTTCACTTCCCCCAGATTCCTACCACCTACCAAAGTAGAAAAATGCAAGATTGTGGATGCAATTATATCTCATGGTTGCTTCTTGAGGGAGTGCAGCGTTCAACATTCTATTGTTGGAGTACGCTCACGTTTGGAGTCTGGTGTGGAGCTTCAGGATACGATGATGATGGGTGCTGACTATTATCAAACTGAGTATGAAATTGCATCTCTGGTGGCAGAAGGGAAGGTTCCAATTGGTGTCGGGGCAAATACTAAAATCAGGAATTGCATAATCGACAAGAATGCCAAGATAGGAAGAAATGTGATCATAGCAAACACCGATGGTGTTCAAGAAGCTGACAGGGCAAAGGAAGGATTCTACATTAGGTCGGGCATCACAGTTACATTAAAAAATGCAACAATCAAAGATGGAACAGTTATATGA

Predicted protein sequences of Glyma06g03340

Limit To All Plant Sequences

>Glyma06g03340.1   sequence type=predicted peptide   gene model=Glyma06g03340   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MDSACATLNGRHLAKVSEGIGRNRTSGFWGESTRGSVNTKRFLSVQSCKTSRTNRNLRNSKPGSGIARAVLTSDIDEDSMAFQGVPTFEKPEVDPKSVASIILGGGAGTRLFPLTGRRAKPAVPIGGCYRLIDIPMSNCINSGIRKIFILTQFNSFSLNRHLSRAYSFGNGMTFGDGFVEVLAATQTPGEAGKKWFQGTADAVRQFIWVFEDAKNKNVEHILILSGDHLYRMDYMDFVQRHVDTNADITVSCVPMDDSRASDYGLMKIDKTGRIIQFAEKPKGSDLKAMRVDTTLLGLLPQEAEKHPYIASMGVYVFRTETLLQLLRWKCSSCNDFGSEIIPSAVNEHNVQAYLFNDYWEDIGTIKSFFDANLALTEQPPKFEFYDPKTPFFTSPRFLPPTKVEKCKIVDAIISHGCFLRECSVQHSIVGVRSRLESGVELQDTMMMGADYYQTEYEIASLVAEGKVPIGVGANTKIRNCIIDKNAKIGRNVIIANTDGVQEADRAKEGFYIRSGITVTLKNATIKDGTVI*

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