SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G19630 | AT | Annotation by Michelle Graham. TAIR10: cytochrome P450, family 722, subfamily A, polypeptide 1 | chr1:6785427-6787967 REVERSE LENGTH=476 | SoyBase | E_val: 3.00E-60 | ISS |
| GO:0055114 | GO-bp | Annotation by Michelle Graham. GO Biological Process: oxidation-reduction process | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005506 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: iron ion binding | SoyBase | N/A | ISS |
| GO:0009055 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: electron carrier activity | SoyBase | N/A | ISS |
| GO:0016705 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | SoyBase | N/A | ISS |
| GO:0019825 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: oxygen binding | SoyBase | N/A | ISS |
| GO:0020037 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: heme binding | SoyBase | N/A | ISS |
| PTHR24286 | Panther | FAMILY NOT NAMED | JGI | ISS | |
| PTHR24286:SF25 | Panther | JGI | ISS | ||
| PF00067 | PFAM | Cytochrome P450 | JGI | ISS | |
| UniRef100_F4HP86 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Cytochrome P450, family 722, subfamily A, polypeptide 1 n=1 Tax=Arabidopsis thaliana RepID=F4HP86_ARATH | SoyBase | E_val: 1.00E-57 | ISS |
| UniRef100_UPI0002339A5F | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI0002339A5F related cluster n=1 Tax=unknown RepID=UPI0002339A5F | SoyBase | E_val: 0 | ISS |
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Glyma06g03320 not represented in the dataset |
Glyma06g03320 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g03250 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g030200 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g03320.2 sequence type=CDS gene model=Glyma06g03320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGCTGCCATCAACAGCAGCAAAGGAGTCTATGAATTTGTCCATGCTCGCCGCCTCCGGTATGAAAAATGCTTCAAGACGAAGTTGTTTGGGGAAACGCACGTTTTTATATCGAGCACGGAGTCTGCAAAAGTGATTGTAAACAAGGAGAACGAGGGAGGGAAATTCTCAAAGAGGTACATAAAATCAATCGCGGAGCTGGTTGGAGCCGATAGCTTGCTCTGTGCGGCACAGCAGCATCATAAACTTATTCGCAGCCATCTCTTCAGTTTCTTCTCAACAGATTCTTTGTCTTCCTTCGTTCAACTCTTTGATTCACTCGTTCTTGAAGCTACACCTACTTGGACATGTGGATCTGTTGTCGTCATACAAGATGAAACGCTCAAGATTGTAAAAGAAGCGTTGAGGAAGGCATCCGTGGTACAGTGGTTGCCCAGAGTAGCACTCGAGGACTGTGAGATTGAAGGATTTAAGATCAAGAAAGGGTGGAACATTAACATCGATGCTAGATCGATACACCATGATCCAACTTTGCAGAATGATCCTGATGTGTTCAATCCTTCAAGATTTCCTGTAGAATCAAAACTATACAGCTTCTTAGCTTTTGGGATGGGAGGAAGGACGTGTCTCGGGAAGAACATGGCTAAAGCTATGATGTTGGTGTTTCTCCACCGTTTCATCACCAATTACAAGTGGAAGGTGATTGATTCTGACTCAAGTATTCAGAATCGGGCACTTTTTACAAAAATTAAGAGTGGTTATCCTTTACGTTTGATATCTAAGAAGGATGCCAAAAACAAAACCATGTGA
>Glyma06g03320.2 sequence type=predicted peptide gene model=Glyma06g03320 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MAAINSSKGVYEFVHARRLRYEKCFKTKLFGETHVFISSTESAKVIVNKENEGGKFSKRYIKSIAELVGADSLLCAAQQHHKLIRSHLFSFFSTDSLSSFVQLFDSLVLEATPTWTCGSVVVIQDETLKIVKEALRKASVVQWLPRVALEDCEIEGFKIKKGWNINIDARSIHHDPTLQNDPDVFNPSRFPVESKLYSFLAFGMGGRTCLGKNMAKAMMLVFLHRFITNYKWKVIDSDSSIQNRALFTKIKSGYPLRLISKKDAKNKTM*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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