Glyma06g03240 - SoyBase

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Report for Sequence Feature Glyma06g03240

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2274777
stop:	2278631
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g03240

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G75400	AT	Annotation by Michelle Graham. TAIR10: RING/U-box superfamily protein \| chr1:28297609-28299464 FORWARD LENGTH=455	SoyBase	E_val: 1.00E-114	ISS
GO:0006499	GO-bp	Annotation by Michelle Graham. GO Biological Process: N-terminal protein myristoylation	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
UniRef100_B9R7Z4	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Ubiquitin-protein ligase, putative n=1 Tax=Ricinus communis RepID=B9R7Z4_RICCO	SoyBase	E_val: 2.00E-177	ISS
UniRef100_UPI0002339A5A	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002339A5A related cluster n=1 Tax=unknown RepID=UPI0002339A5A	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g03240

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g03240

Paralog	Evidence	Comments
Glyma04g03190	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g03240 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g029500	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g03240

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g03240

Limit To All Plant Sequences

>Glyma06g03240.3   sequence type=transcript   gene model=Glyma06g03240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
TTTTCGAAAACACACAAACATGAAAGTAGCTGAGGCAGAAGAGACAAAAATAAAGGCGGGGAAAGAAACATCCTCTGCCCGAAGACTATGACCTAACTCCGTGATAACGATTGCCGCTAAAGACTCAGCCTTATACAGACACGGCGTTATACAAACACTGTACACTGGTCGAAGCCAAAGACCGAAGACGAAGCCGAAGCCGAAAATGACTACTTGCTAATAATTCCCATTTTTTTCTCCGAAACTCAAAACTTTTTCATTTCAAGAGTTATCATGGGATCGGCTTGTTGTGTTGCTGCAAAGGATCATACTATTCCCAGCACTAGCAGAACTGGAGGTGAAAGTTTAAATAGAAATGCTGTATGTTCGCCAACATGGAGTTTTCAATGGGATAGTTGGGGCCGTGTTGCTGGCGAAATTGAGGATCCTTCCTTTCACACATCTCACAGAGTCAGCAGAAATGTCAGCATGGAGTTAAAAGGGTCATTAAGCTCTGAAAGAGGCAATTTATCTGATTGGGGAAGCACCCTGGATAATTCTGTAACACCCATGTCTCTGAAGTCCCCTGTTCGTGAGCATTTGGTTACAAGTCAGATGACTCCATCTTTAGATCTATTCATGTCAAGTAATTGCTCTGCAGTGGTGAAGAATCTGATTGAATCACCAGAGATTGCAGAATCTTCAATACCTTCAGTTTTCCCAACACCTATGTCAGATCCAATGACTAATCATAATTATCACAATCTTACTAACTCAACACCATCCAGATGGGCTCATCGTTCTCCCGGGCACCCACTTTTAAGACAAATTTCTGATAGTCGAATTCTGGGTCTGAAATCACCTGACACCTCAATTTCTGAAGGCAGGCCATCATTTGTACTCTCCAACTGTAGCAATGATATGGCAACAGGATCGCAATGCGGGTCATCTGATGGCTGGTCTATGCGCACTTTTTCTGAAATGGTGGCTTCATCTCAAAAGGAAAGGTGGTCTTTTGATAGCGAGTATACTGGTTCAGGTCGTCACAAGATAAGTGGAACCAGTAGCAGGTTCTCGTATTCTCCCTCCATGGATTTACAATCTTGTGGGGCTTGCTCAAAGCTCTTGACCGATAGATCTGCATGGGGTAGCCAGAAATTTATTGCCAGCAGTGACCTCTCAGTTGTTGCTGTACTGGTCTGTGGTCATGTTTACCACGCGGAATGCTTGGAGACTATAACGCCAGAGGCAGATAGTTATGATCCAGCTTGTCCAATTTGTATGGTTGGAGAAAAGTACATGTCGAAGTTATCCAAAAAAGGTCTTTGGACCGAGTCAGAGACTAAGACCAAGAACTACAAGATATCCAGAAACCGAGTAGTTGATAGCTACGTAGATGGTGGGAATGATGTTTTTGATCGCCTAAAAGATATAGTTTCAAAGATGGAGCCTAGTAGCTCCAGTACTAGGAGTTCATTTGGAAAACCCTTCCTGAGGCGGCATTTTTCTTTGGGATCAAAGTGGAGCCGGTCCTTATTGGAGAATGATTCTGCCAGGAAGAAGGGCTTTTGGGCGAGATGTCGCAGAGACTGATTTCCCCTAGCCATAGCTTTTAGTCGCAGGAGTTCTTCAATTATACTAGTAACACCAACCAAGTTAGAATTTTATATTTTCTATGCAGTCTAGCTTTAGTAATAGTTTAGATTTATTTCAAATTTTATTTTAACTTGTCACCAAAAGTTCCCACCATGTTGACGTGGATCATATTGATTGTATGAATGAAGCGTCTTTTGGAAAAATCAGAGCCTTAGCACTGACGAACACAAGGATGCTAATTGCGAAGGAAACTACACCACCTGTATTAAATGTTGTAACACAAGCTGCACTTACCTGCTTGAGGCTTAAAAATGATAAACTGTGATCAGTTTTTATTTAATTCTAGATCAATTAAAAGTGGAAGAAAACCCTCATTCCTTGAAAGAAATTAGAATATGAAATTAAGACGGATAATATTGCCAGTGTGACGCAAATGAATGCGCCCATATAAGAAGACATTAACAGTCGAATGCTGCTCTCACTCTGTCTATTCT

Coding sequences of Glyma06g03240

Limit To All Plant Sequences

>Glyma06g03240.2   sequence type=CDS   gene model=Glyma06g03240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATCGGCTTGTTGTGTTGCTGCAAAGGATCATACTATTCCCAGCACTAGCAGAACTGGAGGTGAAAGTTTAAATAGAAATGCTGTATGTTCGCCAACATGGAGTTTTCAATGGGATAGTTGGGGCCGTGTTGCTGGCGAAATTGAGGATCCTTCCTTTCACACATCTCACAGAGTCAGCAGAAATGTCAGCATGGAGTTAAAAGGGTCATTAAGCTCTGAAAGAGGCAATTTATCTGATTGGGGAAGCACCCTGGATAATTCTGTAACACCCATGTCTCTGAAGTCCCCTGTTCGTGAGCATTTGGTTACAAGTCAGATGACTCCATCTTTAGATCTATTCATGTCAAGTAATTGCTCTGCAGTGGTGAAGAATCTGATTGAATCACCAGAGATTGCAGAATCTTCAATACCTTCAGTTTTCCCAACACCTATGTCAGATCCAATGACTAATCATAATTATCACAATCTTACTAACTCAACACCATCCAGATGGGCTCATCGTTCTCCCGGGCACCCACTTTTAAGACAAATTTCTGATAGTCGAATTCTGGGTCTGAAATCACCTGACACCTCAATTTCTGAAGGCAGGCCATCATTTGTACTCTCCAACTGTAGCAATGATATGGCAACAGGATCGCAATGCGGGTCATCTGATGGCTGGTCTATGCGCACTTTTTCTGAAATGGTGGCTTCATCTCAAAAGGAAAGGTGGTCTTTTGATAGCGAGTATACTGGTTCAGGTCGTCACAAGATAAGTGGAACCAGTAGCAGGTTCTCGTATTCTCCCTCCATGGATTTACAATCTTGTGGGGCTTGCTCAAAGCTCTTGACCGATAGATCTGCATGGGGTAGCCAGAAATTTATTGCCAGCAGTGACCTCTCAGTTGTTGCTGTACTGGTCTGTGGTCATGTTTACCACGCGGAATGCTTGGAGACTATAACGCCAGAGGCAGATAGTTATGATCCAGCTTGTCCAATTTGTATGGTTGGAGAAAAGTACATGTCGAAGTTATCCAAAAAAGGTCTTTGGACCGAGTCAGAGACTAAGACCAAGAACTACAAGATATCCAGAAACCGAGTAGTTGATAGCTACGTAGATGGTGGGAATGATGTTTTTGATCGCCTAAAAGATATAGTTTCAAAGATGGAGCCTAGTAGCTCCAGTACTAGGAGTTCATTTGGAAAACCCTTCCTGAGGCGGCATTTTTCTTTGGGATCAAAGTGGAGCCGGTCCTTATTGGAGAATGATTCTGCCAGGAAGAAGGGCTTTTGGGCGAGATGTCGCAGAGACTGA

>Glyma06g03240.3   sequence type=CDS   gene model=Glyma06g03240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGATCGGCTTGTTGTGTTGCTGCAAAGGATCATACTATTCCCAGCACTAGCAGAACTGGAGGTGAAAGTTTAAATAGAAATGCTGTATGTTCGCCAACATGGAGTTTTCAATGGGATAGTTGGGGCCGTGTTGCTGGCGAAATTGAGGATCCTTCCTTTCACACATCTCACAGAGTCAGCAGAAATGTCAGCATGGAGTTAAAAGGGTCATTAAGCTCTGAAAGAGGCAATTTATCTGATTGGGGAAGCACCCTGGATAATTCTGTAACACCCATGTCTCTGAAGTCCCCTGTTCGTGAGCATTTGGTTACAAGTCAGATGACTCCATCTTTAGATCTATTCATGTCAAGTAATTGCTCTGCAGTGGTGAAGAATCTGATTGAATCACCAGAGATTGCAGAATCTTCAATACCTTCAGTTTTCCCAACACCTATGTCAGATCCAATGACTAATCATAATTATCACAATCTTACTAACTCAACACCATCCAGATGGGCTCATCGTTCTCCCGGGCACCCACTTTTAAGACAAATTTCTGATAGTCGAATTCTGGGTCTGAAATCACCTGACACCTCAATTTCTGAAGGCAGGCCATCATTTGTACTCTCCAACTGTAGCAATGATATGGCAACAGGATCGCAATGCGGGTCATCTGATGGCTGGTCTATGCGCACTTTTTCTGAAATGGTGGCTTCATCTCAAAAGGAAAGGTGGTCTTTTGATAGCGAGTATACTGGTTCAGGTCGTCACAAGATAAGTGGAACCAGTAGCAGGTTCTCGTATTCTCCCTCCATGGATTTACAATCTTGTGGGGCTTGCTCAAAGCTCTTGACCGATAGATCTGCATGGGGTAGCCAGAAATTTATTGCCAGCAGTGACCTCTCAGTTGTTGCTGTACTGGTCTGTGGTCATGTTTACCACGCGGAATGCTTGGAGACTATAACGCCAGAGGCAGATAGTTATGATCCAGCTTGTCCAATTTGTATGGTTGGAGAAAAGTACATGTCGAAGTTATCCAAAAAAGGTCTTTGGACCGAGTCAGAGACTAAGACCAAGAACTACAAGATATCCAGAAACCGAGTAGTTGATAGCTACGTAGATGGTGGGAATGATGTTTTTGATCGCCTAAAAGATATAGTTTCAAAGATGGAGCCTAGTAGCTCCAGTACTAGGAGTTCATTTGGAAAACCCTTCCTGAGGCGGCATTTTTCTTTGGGATCAAAGTGGAGCCGGTCCTTATTGGAGAATGATTCTGCCAGGAAGAAGGGCTTTTGGGCGAGATGTCGCAGAGACTGA

Predicted protein sequences of Glyma06g03240

Limit To All Plant Sequences

>Glyma06g03240.2   sequence type=predicted peptide   gene model=Glyma06g03240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSACCVAAKDHTIPSTSRTGGESLNRNAVCSPTWSFQWDSWGRVAGEIEDPSFHTSHRVSRNVSMELKGSLSSERGNLSDWGSTLDNSVTPMSLKSPVREHLVTSQMTPSLDLFMSSNCSAVVKNLIESPEIAESSIPSVFPTPMSDPMTNHNYHNLTNSTPSRWAHRSPGHPLLRQISDSRILGLKSPDTSISEGRPSFVLSNCSNDMATGSQCGSSDGWSMRTFSEMVASSQKERWSFDSEYTGSGRHKISGTSSRFSYSPSMDLQSCGACSKLLTDRSAWGSQKFIASSDLSVVAVLVCGHVYHAECLETITPEADSYDPACPICMVGEKYMSKLSKKGLWTESETKTKNYKISRNRVVDSYVDGGNDVFDRLKDIVSKMEPSSSSTRSSFGKPFLRRHFSLGSKWSRSLLENDSARKKGFWARCRRD*

>Glyma06g03240.3   sequence type=predicted peptide   gene model=Glyma06g03240   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGSACCVAAKDHTIPSTSRTGGESLNRNAVCSPTWSFQWDSWGRVAGEIEDPSFHTSHRVSRNVSMELKGSLSSERGNLSDWGSTLDNSVTPMSLKSPVREHLVTSQMTPSLDLFMSSNCSAVVKNLIESPEIAESSIPSVFPTPMSDPMTNHNYHNLTNSTPSRWAHRSPGHPLLRQISDSRILGLKSPDTSISEGRPSFVLSNCSNDMATGSQCGSSDGWSMRTFSEMVASSQKERWSFDSEYTGSGRHKISGTSSRFSYSPSMDLQSCGACSKLLTDRSAWGSQKFIASSDLSVVAVLVCGHVYHAECLETITPEADSYDPACPICMVGEKYMSKLSKKGLWTESETKTKNYKISRNRVVDSYVDGGNDVFDRLKDIVSKMEPSSSSTRSSFGKPFLRRHFSLGSKWSRSLLENDSARKKGFWARCRRD*

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