Report for Sequence Feature Glyma06g03200
Feature Type: gene_model
Chromosome: Gm06
Start: 2252754
stop: 2257597
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g03200
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G75410 AT
Annotation by Michelle Graham. TAIR10: BEL1-like homeodomain 3 | chr1:28300095-28301890 REVERSE LENGTH=524
SoyBase E_val: 2.00E-114 ISS
GO:0006355 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent
SoyBase N/A ISS
GO:0048510 GO-bp
Annotation by Michelle Graham. GO Biological Process: regulation of timing of transition from vegetative to reproductive phase
SoyBase N/A ISS
GO:0048513 GO-bp
Annotation by Michelle Graham. GO Biological Process: organ development
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003677 GO-mf
Annotation by Michelle Graham. GO Molecular Function: DNA binding
SoyBase N/A ISS
GO:0003700 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity
SoyBase N/A ISS
GO:0005515 GO-mf
Annotation by Michelle Graham. GO Molecular Function: protein binding
SoyBase N/A ISS
GO:0043565 GO-mf
Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding
SoyBase N/A ISS
KOG0773
KOG
Transcription factor MEIS1 and related HOX domain proteins
JGI ISS
PTHR11850 Panther
HOMEOBOX PROTEIN
JGI ISS
PTHR11850:SF14 Panther
BEL1 HOMEOTIC PROTEIN
JGI ISS
PF00046 PFAM
Homeobox domain
JGI ISS
PF07526 PFAM
Associated with HOX
JGI ISS
UniRef100_G7I5U5 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: BEL1-like homeodomain protein n=1 Tax=Medicago truncatula RepID=G7I5U5_MEDTR
SoyBase E_val: 0 ISS
UniRef100_I1K7P2 UniRef
Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7P2_SOYBN
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g03200
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g03200
Paralog Evidence Comments
Glyma04g03150 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g03200 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g029100 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g03200
Coding sequences of Glyma06g03200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g03200.1 sequence type=CDS gene model=Glyma06g03200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGTATCCCAACCAAGCCTTTTCTTCAGGTTCTTATGCGGAGATGATGTCTGGGACTTCTCTGTTACCTCATGACTACAGTGAAACTGTAGGTGGAGGACAAAACGAGGTTAAGTTTATCACAGCAATGGGTGAGACAGTGACCATGCACTCTATTAATGGTCATTCCAATGCTGCAAATGGTGATCCATCATGCAACTCTTTTGCTGGGGATTCCCACGTTGTTTCAAGGACACAAATGGGAATGGCAGATAGTGAGCAAAACGTAAATTGTCAGGGCCTATCTCTCAGTCTTGGGACACTCATGCCTTCTAATGCATCCGTCTCTCCATTTCAATACCAATATCACGACACTGGTCTCTTACCACTAATGAATGATTATCCAAATCCAAAGGGAGCCATGTCTCTCAAAAATGATGAGGGCAATAACCTACATAGGGAGTTTAGAAGTGCTGAATGCATGGCATCTGTGTCTTCTGGAGGCTTTCTTGACATGGTAAAAAAGGAGTGTTTTTACAACCCCCATGACCCCTCAATGTGTCTTAAAGAAGTCCCCTCTGATCTACCAGGTTACTCAAACAGTATTTTGAACTCTCAATACCTGAAGGCGGCACAAGATTTGCTTGATGAAATAGTTAGTGTCCGAAAGGCTTTGAAGCAATCTGGAATGGAAAAACAAGAGAACACTGGATTAGATGGCTCTAAAGATTCTGATGGAAAATCTACCAGTCAATCTATGCAAATGTCTTCAGGCCCTAATGGTTCCACTGCTAATGCTTCTAGTGAACTATCATCCGCAGAGCGGCAGAACTTGTTGGACAAGAAAACAAAGCTTTTGTCCATGTTGGATGAGGTAGATAAAAGATACAGACAGTACTGCCATCAGATGCAGATTGTGGTGTCATCTTTTGACATGGTTGCTGGCTGTGGAGCAGCAGAACCATATACCACACTTGCCTTAAGAACAATTTCTCGCCACTTTCGGTGTTTGCGTGATGCCATCAGTGGCCAAATTCAGGTGACCCAAAGAAGCCTTGGGGAGCAAGAAGGAATACCCCGTCTCCGCTATGTGGATCAGCAACTTAGACAACAAAAGGCACTTCAGCAACTTGGTGTAATGAGACAAGCTTGGAGGCCTCAGAGGGGTCTTCCTGAAAGCTCTGTTTCAATACTCCGTGCTTGGCTCTTTGAACATTTTCTTCATCCTTACCCCAAGGATTCTGAGAAAATTATGCTGGCTAGGCAAACAGGCTTGACCAGAAACCAGGTGGCCAATTGGTTCATCAATGCAAGGGTGCGTCTCTGGAAGCCAATGGTTGAGGAAATGTACAAAGAGGAGTTTGGAGACTCCGAGATGAACTGCAACCTTTCATCTGAGAACAACACGGTCAAATGTAAAAAAGATGATCTTGTTCAAGAGTCTGATAACATTAACAACAATAATAAATGGGAAGAGACACAGGACAATTTAGTAACTGTTGACAGTGTCCAAGTCCAACCTCAAGCAGAACTGGATAGAGGGGTCAATGTAGAAAATGTGGTGATGGATTCTGGAACTGGGAAATTGCAGGGTGATCAAAACCAACAAAGGCTTGGCATGAACAACAACAACAACTTTTATTCTATCTCAACCAACCAGAATGATGGAGGCCTAATGGGTTGTTCTACTCATGCCACATATGATTTATCAGAGTTGGGTAACTTTACTGTGGGTAGCCACGTTTCCCTTGCATTGGAGTTGAGGAACTGTGAAAGTGATGGGTTTGCCATGTCTGATGATGCCATACGCAAACGACGTAATCAAGCATTGGCCTCTTCCCCGGAGACTGATTTGCTAGATTATCATTTCACGGATTCAGGAAAGCAACAACACAGGTTTGGCAATCCCCATTTGCTGCATGAGTTTGTCGTATGA
Predicted protein sequences of Glyma06g03200
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g03200.1 sequence type=predicted peptide gene model=Glyma06g03200 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MYPNQAFSSGSYAEMMSGTSLLPHDYSETVGGGQNEVKFITAMGETVTMHSINGHSNAANGDPSCNSFAGDSHVVSRTQMGMADSEQNVNCQGLSLSLGTLMPSNASVSPFQYQYHDTGLLPLMNDYPNPKGAMSLKNDEGNNLHREFRSAECMASVSSGGFLDMVKKECFYNPHDPSMCLKEVPSDLPGYSNSILNSQYLKAAQDLLDEIVSVRKALKQSGMEKQENTGLDGSKDSDGKSTSQSMQMSSGPNGSTANASSELSSAERQNLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVAGCGAAEPYTTLALRTISRHFRCLRDAISGQIQVTQRSLGEQEGIPRLRYVDQQLRQQKALQQLGVMRQAWRPQRGLPESSVSILRAWLFEHFLHPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEMYKEEFGDSEMNCNLSSENNTVKCKKDDLVQESDNINNNNKWEETQDNLVTVDSVQVQPQAELDRGVNVENVVMDSGTGKLQGDQNQQRLGMNNNNNFYSISTNQNDGGLMGCSTHATYDLSELGNFTVGSHVSLALELRNCESDGFAMSDDAIRKRRNQALASSPETDLLDYHFTDSGKQQHRFGNPHLLHEFVV*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
