Report for Sequence Feature Glyma06g03030
Feature Type: gene_model
Chromosome: Gm06
Start: 2117502
stop: 2120171
Source: JGI
Version: Wm82.a1.v1.1
High confidence: yes
A newer version of this gene model can be found here:
Annotations for Glyma06g03030
Database ID Annotation Type Annotation Description Annotation Source Match Score Evidence Code
AT1G19790 AT
Annotation by Michelle Graham. TAIR10: SHI-related sequence 7 | chr1:6838400-6839831 REVERSE LENGTH=345
SoyBase E_val: 8.00E-79 ISS
GO:0008150 GO-bp
Annotation by Michelle Graham. GO Biological Process: biological process
SoyBase N/A ISS
GO:0005634 GO-cc
Annotation by Michelle Graham. GO Cellular Compartment: nucleus
SoyBase N/A ISS
GO:0003674 GO-mf
Annotation by Michelle Graham. GO Molecular Function: molecular function
SoyBase N/A ISS
PF05142 PFAM
Domain of unknown function (DUF702)
JGI ISS
UniRef100_E6NU70 UniRef
Annotation by Michelle Graham. Most informative UniRef hit: JHL18I08.14 protein n=1 Tax=Jatropha curcas RepID=E6NU70_9ROSI
SoyBase E_val: 5.00E-87 ISS
UniRef100_UPI00023398EC UniRef
Annotation by Michelle Graham. Best UniRef hit: UPI00023398EC related cluster n=1 Tax=unknown RepID=UPI00023398EC
SoyBase E_val: 0 ISS
Expression Patterns of Glyma06g03030
Gene expression representations made with eFP at the University of Toronto. Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
To see more experiments click HERE Paralogs of Glyma06g03030
Paralog Evidence Comments
Glyma04g03000 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.
Gene model name correspondences to Glyma06g03030 Gene Call Version Wm82.a1.v1.1
Corresponding Name Annotation Version Evidence Comments
Glyma.06g027500 Wm82.a2.v1 IGC As supplied by JGI
References for Glyma06g03030
Coding sequences of Glyma06g03030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NT Limit To All Plant Sequences
>Glyma06g03030.1 sequence type=CDS gene model=Glyma06g03030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
ATGGCTGGTTTCTTCTCTCTAGGCGGATCACAAAACAAGGAAGAAGAGGAAGTAGAAAAAGGAGGAGACAAGAATAACCTATTATTGTTGAGGAACGAGGAGATCTACAACAGCAAGGGTGGGTTCGAGATATGGCCACAGTCGTCGTCCTCATATCATCAGCATCAGAATCAGGCATACCAAAACTACTTTGCATTTGGAGTGGGTCCTAGTCGCAGGAACAGATCGGAAGATGTTTCATTGTGCGTGTCTGATCATGAGTCTACGAGATTTGGATTAACTGTTATGAGGTCTGGAGTAAGCAGCAGCATGAGCATGAACTGTCAGGACTGTGGGAACCAAGCCAAGAAAGACTGTTCCCATCTCAGATGCAGAACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTTCCCGCAGCCAAGCGCCGCGAACGACACCAACAACTCGCTGCGTTGCAGCAACAACATCAACATCCTAAACGACATCACAGAGACACTACTACTACTCAACTTGCCTCCGCTCCACAACCCATCATAGGGTTAGAGCTGGGACAATTCCCACCTGAAGTGAGCACTTCGGCGGTGTTTCGGTGTGTGAGAGTGAGCGCAGTGGACGCTTCAGATGAACAGTGTGCGTATCAAACCTCTGTCAACATCGGAGGACATGTTTTCAAGGGATTTCTCTACGATCAAGGTCCTGAAAGTTCTTACACTACTAGTGCAGCAGCTGAGGGTTCATCCGGTGGCGAACCTCAACCACTTGGTTTAATAACTGGAGCCACCACAGCCACAAGTGGGAACAACCCATTTGACCCTTCACTTTACCCAGCTCCTTTGAATGCTTTCATGGCTGGTACGCAATTCTTCCAACACCCAAGGTCCTAG
Predicted protein sequences of Glyma06g03030
Show Sequence BLAST Sequence at SoyBase BLAST Sequence against GenBank NR Limit To All Plant Sequences
>Glyma06g03030.1 sequence type=predicted peptide gene model=Glyma06g03030 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high
MAGFFSLGGSQNKEEEEVEKGGDKNNLLLLRNEEIYNSKGGFEIWPQSSSSYHQHQNQAYQNYFAFGVGPSRRNRSEDVSLCVSDHESTRFGLTVMRSGVSSSMSMNCQDCGNQAKKDCSHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERHQQLAALQQQHQHPKRHHRDTTTTQLASAPQPIIGLELGQFPPEVSTSAVFRCVRVSAVDASDEQCAYQTSVNIGGHVFKGFLYDQGPESSYTTSAAAEGSSGGEPQPLGLITGATTATSGNNPFDPSLYPAPLNAFMAGTQFFQHPRS*
SoyBase
SoyBase transitions to NEW site on 10/1/2024
