Glyma06g02950 - SoyBase

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Report for Sequence Feature Glyma06g02950

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2054250
stop:	2059249
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02950

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36210	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF726) \| chr4:17130354-17134302 FORWARD LENGTH=672	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0045892	GO-bp	Annotation by Michelle Graham. GO Biological Process: negative regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009507	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: chloroplast	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
KOG2385	KOG	Uncharacterized conserved protein	JGI		ISS
PTHR17920	Panther	UNCHARACTERIZED	JGI		ISS
PF05277	PFAM	Protein of unknown function (DUF726)	JGI		ISS
UniRef100_G7J4N6	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Transmembrane and coiled-coil domain-containing protein n=1 Tax=Medicago truncatula RepID=G7J4N6_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023398E7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023398E7 related cluster n=1 Tax=unknown RepID=UPI00023398E7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02950

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Gene model name correspondences to Glyma06g02950 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g026800	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02950

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g02950

Limit To All Plant Sequences

>Glyma06g02950.1   sequence type=CDS   gene model=Glyma06g02950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAAGCTCCTCAACCTTGTCGCGTACTCATAGACACGCTGCGGCTTCTCTGTTTGCTCTCGCATTTCACCGCTCTCAAATTCATCAAATTCGCATCTCTGGAACTGCTTCTGTTTCAAATAACCCCGAGCTTTGGATTAAGCACAATTCTGATTTGCTTTGCCCAATTTTTAGGTTCCTTGGAGTGGATGATCAGTCCTGGCATGGCCTAGAGGCAACTGCCACTTCCTCTTCCCAACTCGGGCATCACCTTGGATCTTTCTTGCAATTGCTGTCAGAGGAAGGTGATGCTACTACTCCTGAAGGATTGGATAAAGAATCCGCGTTGAGCAAAGCCATTGATGCCTCGGCTATGAGCATGAACGATACTACTCCTATTGCCGATTCTCCAAGTGGTGACCATGGACTCAACACTAGAAGCCAAGATGATGTATGTGAAATTATGGAGACCTCAGCTTTGCTGCCTCTAAAGAAACAACCTTCTAATACACTAGAAATTGCAAGGTTTGAACAACCTTTGGCGGAGGCGAACCTTATCGGTTACGAGAAGAAAATGGCAGTTCTTTACGCACTTGTTGCAGCTTGTGTAGCAGATACTGACAAGTCAAGGCAGGGCTATGATGCTCGTCACCGTGTGGCTCTGCGGTTGCTTGCTGTATGGCTTGATGTCAAATGGAATGAAATGGAAGCAATGGAGTCTATGGTTGCTTTTTCTGTAATGAATTCTGTGAATAAAAAAGGTGCCAAGGAAGAAGAATCTGTAGGTTCAGAAACCAGCTGGGATAAATGGAAGCGTGGAGGTATCATAGGAGCAGCTGCTGTAACTGGAGGAACCTTAATGGCTATAACTGGTGGCTTGGCTGCCCCGGCAATTGCTCATGGATTGGGTGCTTTGGCTCCTACACTAGGCGGCATTGTTCCTGCCATTGGTGGTGGATTTGCTGCTGCAGCAACCGCTACAGGATCTGCTGTTGGATCTGTGGCTGTTGCTGCATCATTTGGAGCTGCTGGAGCTGGCCTTACTGGGAGTAAGATGGCTACAAGAATTGGAAGTCTTGAGGAATTTGAGTTAAAAGGTGTTGGAGGCATTAATGAAGGCCACCTAGCAGTTAGAATCTCCATTTCTGGGCTTGCATTTAAGGAGAAAGATTTCATAGAACCTTGGGAAGGTCTCAATGATAACATGGAGAGGTACGTGCTCCAATACGAGTCTAAAAATTTGATTGCACTGAGCACAGCCATCCAGGACTGGCTTACTTCACTAATTGCAATCCAGTTGATGAAAGACGGTGCCATGCTGACAGTATTAAGCTCACTTCTGACAGCTCTAGCATGGCCAGCAACTTTAGTTGCTTCATTCGATATTATTGACAGTAAATGGGCAATTGCAGTGGACAGATCAGACAGGGCTGGTAAGGTGCTTGCTGAAGTGTTGTTGCACGGCTTGCAAGGAAACAGGCCTGTGACACTAGTAGGTTTTTCATTGGGAGCCCGTGTTATTTTCAAGTGTCTCCAATGTTTGTCTGAATCCAAAGGAGACAATGCTGGAATAGTGGAAAGGGTTGTTTTCCTTGGAGCTCCCATCTCAATTGGAGAGGAAAATTGGGAGGCAGCTAGAAAGATGGTGGCTGGAAGGTTTGTGAATGCTTACTCTTCCAATGATTGGACGTTAGGCATAACTTTCCGTGCCAGTTTACTCTCTCATGGATTAGCTGGAATCCAACCTGTTGATGTTCCTGGGGTTGAGAATGTTGATGTGACACAACTTATAGAAGGTCACTCTTCCTACTTGCGGATGACACAAAAAATACTGGAGCAGCTTGAATTGGACAACTGTTGTGCTGTTTTCAAAAGTGGACAAGAAAATCCACAGGAAGAAAAGAGTTAG

Predicted protein sequences of Glyma06g02950

Limit To All Plant Sequences

>Glyma06g02950.1   sequence type=predicted peptide   gene model=Glyma06g02950   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEESSSTLSRTHRHAAASLFALAFHRSQIHQIRISGTASVSNNPELWIKHNSDLLCPIFRFLGVDDQSWHGLEATATSSSQLGHHLGSFLQLLSEEGDATTPEGLDKESALSKAIDASAMSMNDTTPIADSPSGDHGLNTRSQDDVCEIMETSALLPLKKQPSNTLEIARFEQPLAEANLIGYEKKMAVLYALVAACVADTDKSRQGYDARHRVALRLLAVWLDVKWNEMEAMESMVAFSVMNSVNKKGAKEEESVGSETSWDKWKRGGIIGAAAVTGGTLMAITGGLAAPAIAHGLGALAPTLGGIVPAIGGGFAAAATATGSAVGSVAVAASFGAAGAGLTGSKMATRIGSLEEFELKGVGGINEGHLAVRISISGLAFKEKDFIEPWEGLNDNMERYVLQYESKNLIALSTAIQDWLTSLIAIQLMKDGAMLTVLSSLLTALAWPATLVASFDIIDSKWAIAVDRSDRAGKVLAEVLLHGLQGNRPVTLVGFSLGARVIFKCLQCLSESKGDNAGIVERVVFLGAPISIGEENWEAARKMVAGRFVNAYSSNDWTLGITFRASLLSHGLAGIQPVDVPGVENVDVTQLIEGHSSYLRMTQKILEQLELDNCCAVFKSGQENPQEEKS*

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