Glyma06g02940 - SoyBase

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Report for Sequence Feature Glyma06g02940

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2043497
stop:	2049611
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02940

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G24170	AT	Annotation by Michelle Graham. TAIR10: ATP binding microtubule motor family protein \| chr4:12543206-12546805 FORWARD LENGTH=1004	SoyBase	E_val: 1.00E-176	ISS
GO:0007018	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule-based movement	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003777	GO-mf	Annotation by Michelle Graham. GO Molecular Function: microtubule motor activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
KOG0242	KOG	Kinesin-like protein	JGI		ISS
PTHR24115	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24115:SF189	Panther	SUBFAMILY NOT NAMED	JGI		ISS
PF00225	PFAM	Kinesin motor domain	JGI		ISS
PF11995	PFAM	Domain of unknown function (DUF3490)	JGI		ISS
UniRef100_B9R839	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: ATP binding protein, putative n=1 Tax=Ricinus communis RepID=B9R839_RICCO	SoyBase	E_val: 0	ISS
UniRef100_UPI00023398E6	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023398E6 related cluster n=1 Tax=unknown RepID=UPI00023398E6	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02940

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02940

Paralog	Evidence	Comments
Glyma04g02930	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02940 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g026700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02940

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g02940

Limit To All Plant Sequences

>Glyma06g02940.2   sequence type=CDS   gene model=Glyma06g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTGAAGACCGGAGATACAGCGTCCATGGCAGACGTCAAAGAGGAGCAGGGAAACATGGCTCTGTCAAATCCTCTGGAAGAGAGAATCTTCGTTTCCATCAGAGTAAGACCTTTGAACGATAGAGAAAAAGCCAGGCACGATGTTCCCGATTGGGAATGCATTTCTGGCAACACCATCAGATACAAGAACAACGGCCATGCGGAACCGCGACCACTCTCAATGGATACCTACGCCTTTGATAGGGTGTTTGGGGAAAGGTGCAATACAAAGCAGGTTTATGAACAAGGGATTAAGGAAGTTGCCCTTTCAGTAGTTAGGGGTATTAACTCTAGCATTTTTGCTTACGGGCAAACAAGCAGTGGAAAGACACACACCATGTCTGGCATTACTGAATATGCTGTGAGGGATATCTATGAATATATAGAGAAGCACAAAGACAGAGAATTTGTTGTCAAGTTCTCTGCCATGGAGATCTATAATGAAGCTGTCAGAGACCTTCTCAATGCAGGTGCTACTTCACTAAGAATTCTAGATGATCCAGAGAAAGGGGCTGTTGTTGAGAAACTCACAGAAAAGACACTGACAGAGAGGAGACAGTTGCAGCAACTACTTTCAATATGTGCAGCTGAAAGGACAACGGAAGAGACGGCCATGAATGAAACTAGCTCTAGATCTCACCAAATTCTTAGATTGACGGTTGAAAGTAATCCTTGTGATTATGCAGACACCGCAAGATCCGGAGCTCTCTTCGCCAGTGTGAATTTTGTTGATCTAGCAGGAAGTGAGCGTGCTTCTCAAACAATGTCAGCAGGCTCAAGATTGAGAGAAGGTAGCCACATAAATCGCAGTTTACTGAGCCTTGGAACTGTAATTCGGAAACTAAGCAAGGGAAGAAATGAACACATACCTTACAGAGACTCTAAGCTTACTCGCATTCTGCAGAACTCTTTAGGTGGTAATGCCAGAACAGCGATCATTTGTACCATTAGCCCTGCAAGGAGCCAGAGTGAGCAATCAAGAAATACTCTGCTTTTTGCTGGTTGCGCAAAACAGGTGACTACTAATGCTCGGGTCAATCTAGTAATGTCGGACAAGGTTTTGGTAAAGCAACTACAAAATGAATTGGCTAGATTGGAGAATGAGTTGAGGAGCTTCACCCCAAATACCATGTTACTTAAGGAGAGAGAACTTCAGATTCAACAGATGGAAAAAGAGATCAAAGAATTGACTCGGCAACGTGATCTCTTTCAATCTCGTGCTGAAAATATGGTCCAACCTGCTGGGAAAGATCGGCTTTTAAGAGTAGACAAAGATTCGGCCTCGGAATCTTCAGGTGCTGTTGCTAAGAATCTTCTTTGCAGGACAGACAGCGCATCTGAGAGTCTTGACAGAACAACAACCAGTTTACAGCACACTGAGAATTCTGAAGACAACTTTCTCTTGGATGGCAATTCTCCCACGTTTGCTGGGCCTGACCCATGTCATGGTTGGGAGGAGATGACAAGCAGCAGAGAATCTGAAGAAAACTGCAAGGAAGTTCCATACTTTGAAATAAAAGAAGTCGAGACAGAACACAAAACAGATGTTAATAATACGCCTCCCATTCCTGTTTTTGAAGAAACTGGAGGAAATACACCCATGATACAAGTTGTGAATGTAATTGCTAAATCATCCTCAAGAAATGAGCTTAGAGAGTTGAGTCTTGTTGCCGTAGATAATAGTCAAAATGCTCTGGAGGGAAAAACCGATGAGAGCCTACAAAATACCAAAGATCTTATTGTGGACATCTCTAAGAAATCCGATGGGTCCTCTGAATCCGAATCACATATCTCGAATGCCATGTCTCCTCCTCAAATAGATAAGGAAACTTCAATACTTCCTCAGATCACTAGTAATTTGGAGCAGAATGAGTCACCTCAGTTTAATAAGTTGGACCAGGAATCCACCTCACCTCCTCAGTGCGATGTGCAAGAGCTTAAAACTACGTTACCTCCTCAACTTGATAAGCCATATTCTGCTAGTTTGGTTTCCTTTGAGGACAAGCTACCTGAATCGAATTTACAAGCTACAAAAAGAAACTCTTCCAGAAAATATTCTCCAATTCACTATAGGGATGCTTCAGTTGAGCATAAAACTACGTTACATCCTCAACTTGATAAGCCGGATTCTACTAGTTTGGTTTGCTTTGAGGACAAGCTACCTGAATCGAAGTTACAAGCTCCAAAAAGAAACTCTTCCAAAAAATATATTCACTATAGGGATGCTTCAGTTGAAGATGTAGAATCCCTTTGGGATTCTGATGTGGAGGATACTGCCAGCGTCCTCAATTTTGTTGGAAAAATGAATGAAAGGGCTAAGCAAAAGCCATTCAACAAGGACATGGATGATATTATGGTACGTGCAAGGACATCTGGAATCAATAAACGTGTGAGCAAAGTAAAAGGGGTCAGTTTCCATGGAGGTCCGAGGACGTTGACGCCTTATAATTTTGAGAGGCAGCAGAGAGATACAATCCAACTTTGGGATGCATGTAATATACCGTTGGTACACAGATCCTATTTTTTCCTTCTCATCAAAGGTGAACTTGCGGATTCTGTGTACTTTGATGTAGAGCTCAGGCGTTTGTCCTTCCTTAAGGACACTTTTTTTAGCGCAACAAACATTGCAGGACATGGTTCGGATGTCACACCTAATTCAAGCTTGATGTCACTGAATCGTGAGAGGAAAATGCTAAGCAAGCAAGTGCATAAGAAGTTCTCGATGAAGGAAAGAGAGGAACTTTACGTGAAGTGGGGTATTGATTTGAAGTCAAAACACAGAAGTGTGCAGTTGGCGTGGCGGTTATGGACGAATACAAAAGACTTGAACCACGTAAGGGAAAGTGCAGCACTTGTTGCGAAGCTGGTTGGTTTTATAAACTCGGGTGAGGCCCCAAAGAAAATATTTGGGTTTGGCTTCTTAGTCCGTCGTAAGTAA

Predicted protein sequences of Glyma06g02940

Limit To All Plant Sequences

>Glyma06g02940.2   sequence type=predicted peptide   gene model=Glyma06g02940   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVKTGDTASMADVKEEQGNMALSNPLEERIFVSIRVRPLNDREKARHDVPDWECISGNTIRYKNNGHAEPRPLSMDTYAFDRVFGERCNTKQVYEQGIKEVALSVVRGINSSIFAYGQTSSGKTHTMSGITEYAVRDIYEYIEKHKDREFVVKFSAMEIYNEAVRDLLNAGATSLRILDDPEKGAVVEKLTEKTLTERRQLQQLLSICAAERTTEETAMNETSSRSHQILRLTVESNPCDYADTARSGALFASVNFVDLAGSERASQTMSAGSRLREGSHINRSLLSLGTVIRKLSKGRNEHIPYRDSKLTRILQNSLGGNARTAIICTISPARSQSEQSRNTLLFAGCAKQVTTNARVNLVMSDKVLVKQLQNELARLENELRSFTPNTMLLKERELQIQQMEKEIKELTRQRDLFQSRAENMVQPAGKDRLLRVDKDSASESSGAVAKNLLCRTDSASESLDRTTTSLQHTENSEDNFLLDGNSPTFAGPDPCHGWEEMTSSRESEENCKEVPYFEIKEVETEHKTDVNNTPPIPVFEETGGNTPMIQVVNVIAKSSSRNELRELSLVAVDNSQNALEGKTDESLQNTKDLIVDISKKSDGSSESESHISNAMSPPQIDKETSILPQITSNLEQNESPQFNKLDQESTSPPQCDVQELKTTLPPQLDKPYSASLVSFEDKLPESNLQATKRNSSRKYSPIHYRDASVEHKTTLHPQLDKPDSTSLVCFEDKLPESKLQAPKRNSSKKYIHYRDASVEDVESLWDSDVEDTASVLNFVGKMNERAKQKPFNKDMDDIMVRARTSGINKRVSKVKGVSFHGGPRTLTPYNFERQQRDTIQLWDACNIPLVHRSYFFLLIKGELADSVYFDVELRRLSFLKDTFFSATNIAGHGSDVTPNSSLMSLNRERKMLSKQVHKKFSMKEREELYVKWGIDLKSKHRSVQLAWRLWTNTKDLNHVRESAALVAKLVGFINSGEAPKKIFGFGFLVRRK*

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