Glyma06g02930 - SoyBase

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Report for Sequence Feature Glyma06g02930

Feature Type:	gene_model
Chromosome:	Gm06
Start:	2032827
stop:	2037050
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02930

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G36180	AT	Annotation by Michelle Graham. TAIR10: Leucine-rich receptor-like protein kinase family protein \| chr4:17120209-17123698 REVERSE LENGTH=1136	SoyBase	E_val: 0	ISS
GO:0000226	GO-bp	Annotation by Michelle Graham. GO Biological Process: microtubule cytoskeleton organization	SoyBase	N/A	ISS
GO:0000911	GO-bp	Annotation by Michelle Graham. GO Biological Process: cytokinesis by cell plate formation	SoyBase	N/A	ISS
GO:0002237	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to molecule of bacterial origin	SoyBase	N/A	ISS
GO:0006260	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA replication	SoyBase	N/A	ISS
GO:0006306	GO-bp	Annotation by Michelle Graham. GO Biological Process: DNA methylation	SoyBase	N/A	ISS
GO:0006468	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein phosphorylation	SoyBase	N/A	ISS
GO:0007165	GO-bp	Annotation by Michelle Graham. GO Biological Process: signal transduction	SoyBase	N/A	ISS
GO:0007169	GO-bp	Annotation by Michelle Graham. GO Biological Process: transmembrane receptor protein tyrosine kinase signaling pathway	SoyBase	N/A	ISS
GO:0008283	GO-bp	Annotation by Michelle Graham. GO Biological Process: cell proliferation	SoyBase	N/A	ISS
GO:0009855	GO-bp	Annotation by Michelle Graham. GO Biological Process: determination of bilateral symmetry	SoyBase	N/A	ISS
GO:0010014	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem initiation	SoyBase	N/A	ISS
GO:0010073	GO-bp	Annotation by Michelle Graham. GO Biological Process: meristem maintenance	SoyBase	N/A	ISS
GO:0010075	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth	SoyBase	N/A	ISS
GO:0010103	GO-bp	Annotation by Michelle Graham. GO Biological Process: stomatal complex morphogenesis	SoyBase	N/A	ISS
GO:0030244	GO-bp	Annotation by Michelle Graham. GO Biological Process: cellulose biosynthetic process	SoyBase	N/A	ISS
GO:0048443	GO-bp	Annotation by Michelle Graham. GO Biological Process: stamen development	SoyBase	N/A	ISS
GO:0051322	GO-bp	Annotation by Michelle Graham. GO Biological Process: anaphase	SoyBase	N/A	ISS
GO:0051567	GO-bp	Annotation by Michelle Graham. GO Biological Process: histone H3-K9 methylation	SoyBase	N/A	ISS
GO:0005886	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane	SoyBase	N/A	ISS
GO:0004672	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein kinase activity	SoyBase	N/A	ISS
GO:0004674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein serine/threonine kinase activity	SoyBase	N/A	ISS
GO:0005524	GO-mf	Annotation by Michelle Graham. GO Molecular Function: ATP binding	SoyBase	N/A	ISS
GO:0016301	GO-mf	Annotation by Michelle Graham. GO Molecular Function: kinase activity	SoyBase	N/A	ISS
GO:0016772	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring phosphorus-containing groups	SoyBase	N/A	ISS
KOG1187	KOG	Serine/threonine protein kinase	JGI		ISS
PTHR24420	Panther	FAMILY NOT NAMED	JGI		ISS
PTHR24420:SF687	Panther		JGI		ISS
PF00069	PFAM	Protein kinase domain	JGI		ISS
PF00560	PFAM	Leucine Rich Repeat	JGI		ISS
PF08263	PFAM	Leucine rich repeat N-terminal domain	JGI		ISS
UniRef100_G7J4P1	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Receptor-like protein kinase n=1 Tax=Medicago truncatula RepID=G7J4P1_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI00023398E5	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023398E5 related cluster n=1 Tax=unknown RepID=UPI00023398E5	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02930

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02930

Paralog	Evidence	Comments
Glyma04g02920	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02930 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g026600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02930

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g02930

Limit To All Plant Sequences

>Glyma06g02930.2   sequence type=CDS   gene model=Glyma06g02930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCAACAACGGTTATATTCTTCAGCTTAACCCTCGTCGCATTCTTCGCTACCCTAAACATAACCTTCGCCCACAACAACACTGCGTTAGAGATTCAAGCCTTAACCTCTTTCAAGCGCAACCTCCACGACCCTCTCGGTTCCTTGGACACTTGGGACCCATCCACGCCATCAGCACCCTGCGACTGGCGCGGCATTGTCTGCCACAACAACCGAGTCCACCAGCTCCGCTTACCGCGTCTCCAACTCGCCGGTCAACTCGCTCCGAATTCTCTTTCCAATCTTCTTCAACTCCGCAAACTCAGTCTCCACTCCAACAACCTCAACTCCTCCATCCCCCTTTCTCTCACGCGCTGCGTCTTTCTGCGCGCCGTTTACCTCCACAACAACAAACTCTCCGGCCACCTTCCTCCGCCGCTCCTAAACCTCACCAACCTCCAAATCCTTAACCTCGCCGGCAACCTCCTCACTGGAAAAGTCCCCGGCCACCTCTCCGCCTCCCTCCGTTTCCTCGACCTCTCCGACAACGCCTTCTCTGGCGACATTCCGGCGAACTTCAGCTCCAAATCCTCTCAGCTCCAGCTCATCAACCTCTCTTACAACAGCTTCACCGGAGGAATACCAGCCTCCATCGGAACGCTGCAATTTCTTCAGTACCTATGGTTAGACTCAAACCACATTCACGGAACCCTACCTTCTGCTCTCGCGAACTGTTCCTCTCTGGTGCACCTGACCGCAGAGGATAACGCTCTCACTGGACTTCTTCCTCCCACCCTCGGAACCATGCCGAAGCTTCATGTGCTTTCGCTTTCGCGGAACCAGCTTTCCGGTTCGGTCCCCGCGTCTGTGTTCTGCAACGCGCACCTACGAAGCGTGAAGCTCGGGTTTAATTCCCTCACGGGATTTTACACGCCGCAAAACGTGGAATGCGACAGCGTTTTGGAGGTTTTGGATGTGAAAGAGAATCGCATTGCTCACGCGCCGTTTCCCTCGTGGTTGACCCACGCGGCGACGACGTCGTTGAAGGCCCTCGATCTTTCTGGAAACTTCTTTACCGGTTCTCTGCCGGTGGACATTGGGAATCTTTCTGCGTTGGAAGAGTTGAGAGTGAAGAATAATTTGTTATCCGGTGGAGTTCCGCGTAGCATTGTGAGATGTAGGGGTTTAACGGTTCTTGATCTTGAGGGTAACCGGTTCTCTGGGTTAATTCCTGAGTTTCTTGGGGAACTGAGGAACCTGAAGGAGTTGTCTCTTGCCGGTAACAAATTTACCGGTTCGGTGCCTTCTAGTTATGGAACGCTTTCTGCGCTTGAGACGCTGAATTTAAGTGATAATAAGTTAACCGGTGTGGTGCCTAAGGAGATCATGCAATTGGGGAACGTGAGCGCTTTGAATTTGAGTAATAACAAATTTTCAGGTCAAGTTTGGGCCAATATTGGAGATATGACGGGTTTGCAGGTTCTTAATTTGAGTCAGTGTGGGTTTTCAGGTAGGGTTCCTAGTTCGTTGGGGAGTTTGATGAGACTAACGGTGTTGGATTTGAGCAAGCAGAACCTCTCGGGTGAGTTGCCCCTTGAGGTTTTCGGGTTACCGAGTCTTCAAGTTGTGGCGCTTCAAGAGAACCATTTGAGTGGTGATGTTCCTGAGGGTTTCAGCAGCATAGTTAGTCTGCGGTATCTTAATCTCAGTTCAAATGAATTTGTTGGTAACATTCCAATAACTTATGGGTTCCTTAGTTCCTTGACGGTTCTCTCTTTGTCTCACAATGGTGTTTCTGGTGAAATACCTCCTGAGATTGGTGGTTGTTCGCAACTTCAAGTTTTGCAGCTGCGGTCAAATTTTCTAGAGGGTAACATTCTGGGTGATATCTCTCGTCTCTCTCGTTTAAAGGAGCTTAATTTGGGGCACAATAGGTTGAAAGGTGATATCCCAGATGAAATATCAGAGTGTCCTTCTTTGAGTTCACTCTTGTTGGATAGTAATCACTTCACGGGTCATATACCAGGTTCATTGTCAAAATTGTCAAATTTGACGGTGTTGAACCTTTCTTCGAATCAATTGACAGGGAAAATTCCGGTTGAACTATCAAGCATTTCTGGTTTGGAGTATTTAAATGTGTCTAGTAATAACCTTGAGGGTGAGATTCCTCACATGCTAGGTGCTACATTCAATGACCCTTCTGTGTTTGCAATGAACCAAGGGTTATGCGGGAAGCCCTTGCACAGAGAATGTGCGAATGAAAAAAGGAGAAAGAGGAGAAGGCTGATAATCTTCATAGGCGTGGCCGTGGCCGGTTTATGCCTCCTGGCGCTGTGTTGTTGTGGTTATGTATACAGCCTCTTGAGGTGGCGCAAGAAGCTTCGTGAAAGGGTGACCGGTGAGAAGAAACGGAGCCCCACAACAAGTAGTGGAGGAGAGAGAGGCAGCAGAGGGAGTGGGGAAAACGGGGGACCAAAACTAGTGATGTTCAACAACAAGATCACGTTAGCGGAGACATTGGAGGCAACGAGAAACTTCGATGAAGAGAACGTGTTGAGCAGGGGAAGATACGGCCTCGTGTTCAAAGCTTCCTACCAGGACGGAATGGTTCTCTCTATTCGTCGTTTTGTTGATGGGTTCACAGATGAAGCCACCTTCCGCAAGGAAGCAGAATCACTAGGCAAAGTGAAGCATCGAAATTTAACAGTTCTACGTGGTTACTATGCAGGCCCACCCGATATGAGACTTCTTGTGTACGACTACATGCCCAACGGGAACTTAGGAACACTACTTCAAGAGGCGTCTCAGCAAGATGGCCATGTGTTGAATTGGCCAATGCGTCATCTTATCGCGCTAGGAATTGCTCGGGGTCTAGCTTTCTTGCATTCGATGCCAATAGTTCATGGTGACGTGAAGCCTCAAAATGTTCTCTTTGATGCAGATTTTGAGGCCCATTTGTCTGAATTTGGGTTGGAGCGGTTGACATTAACAGCACCAGCAGAAGCATCGTCGTCCTCCACCGCAGTTGGGTCTTTAGGGTATGTTTCACCGGAAGCTGCATCGAGTGGGATGGCCACAAAGGAGGGTGATGTGTATAGCTTTGGGATTGTGTTGTTGGAGATACTAACGGGGAAGAAGCCGGTGATGTTCACGGAGGATGAGGACATAGTGAAGTGGGTGAAGAAGCAGTTACAAAGGGGACAAATTTCGGAGTTGTTGGAGCCAGGGTTGCTTGAGCTTGACCCAGAGTCTTCGGAATGGGAAGAGTTTTTGTTGGGTGTGAAAGTTGGTCTCCTATGCACAGCGACGGATCCTCTTGATCGACCATCCATGTCTGACGTTGCTTTCATGCTCCAAGGTTGCCGGGTTGGACCAGAAATTCCATCTTCAGCTGATCCCACAACTCTACCTTCCCCTGCTTGA

Predicted protein sequences of Glyma06g02930

Limit To All Plant Sequences

>Glyma06g02930.2   sequence type=predicted peptide   gene model=Glyma06g02930   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MATTVIFFSLTLVAFFATLNITFAHNNTALEIQALTSFKRNLHDPLGSLDTWDPSTPSAPCDWRGIVCHNNRVHQLRLPRLQLAGQLAPNSLSNLLQLRKLSLHSNNLNSSIPLSLTRCVFLRAVYLHNNKLSGHLPPPLLNLTNLQILNLAGNLLTGKVPGHLSASLRFLDLSDNAFSGDIPANFSSKSSQLQLINLSYNSFTGGIPASIGTLQFLQYLWLDSNHIHGTLPSALANCSSLVHLTAEDNALTGLLPPTLGTMPKLHVLSLSRNQLSGSVPASVFCNAHLRSVKLGFNSLTGFYTPQNVECDSVLEVLDVKENRIAHAPFPSWLTHAATTSLKALDLSGNFFTGSLPVDIGNLSALEELRVKNNLLSGGVPRSIVRCRGLTVLDLEGNRFSGLIPEFLGELRNLKELSLAGNKFTGSVPSSYGTLSALETLNLSDNKLTGVVPKEIMQLGNVSALNLSNNKFSGQVWANIGDMTGLQVLNLSQCGFSGRVPSSLGSLMRLTVLDLSKQNLSGELPLEVFGLPSLQVVALQENHLSGDVPEGFSSIVSLRYLNLSSNEFVGNIPITYGFLSSLTVLSLSHNGVSGEIPPEIGGCSQLQVLQLRSNFLEGNILGDISRLSRLKELNLGHNRLKGDIPDEISECPSLSSLLLDSNHFTGHIPGSLSKLSNLTVLNLSSNQLTGKIPVELSSISGLEYLNVSSNNLEGEIPHMLGATFNDPSVFAMNQGLCGKPLHRECANEKRRKRRRLIIFIGVAVAGLCLLALCCCGYVYSLLRWRKKLRERVTGEKKRSPTTSSGGERGSRGSGENGGPKLVMFNNKITLAETLEATRNFDEENVLSRGRYGLVFKASYQDGMVLSIRRFVDGFTDEATFRKEAESLGKVKHRNLTVLRGYYAGPPDMRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSMPIVHGDVKPQNVLFDADFEAHLSEFGLERLTLTAPAEASSSSTAVGSLGYVSPEAASSGMATKEGDVYSFGIVLLEILTGKKPVMFTEDEDIVKWVKKQLQRGQISELLEPGLLELDPESSEWEEFLLGVKVGLLCTATDPLDRPSMSDVAFMLQGCRVGPEIPSSADPTTLPSPA*

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