SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT4G29860 | AT | Annotation by Michelle Graham. TAIR10: Transducin/WD40 repeat-like superfamily protein | chr4:14603296-14605704 REVERSE LENGTH=386 | SoyBase | E_val: 2.00E-176 | ISS |
| GO:0009790 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development | SoyBase | N/A | ISS |
| GO:0009793 | GO-bp | Annotation by Michelle Graham. GO Biological Process: embryo development ending in seed dormancy | SoyBase | N/A | ISS |
| GO:0048700 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acquisition of desiccation tolerance in seed | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0080008 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: CUL4-RING ubiquitin ligase complex | SoyBase | N/A | ISS |
| GO:0000166 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: nucleotide binding | SoyBase | N/A | ISS |
| KOG0322 | KOG | G-protein beta subunit-like protein GNB1L, contains WD repeats | JGI | ISS | |
| PTHR22847 | Panther | WD40 REPEAT PROTEIN | JGI | ISS | |
| PTHR22847:SF104 | Panther | OS06G0131100 PROTEIN | JGI | ISS | |
| PF00400 | PFAM | WD domain, G-beta repeat | JGI | ISS | |
| UniRef100_G7J4P6 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Guanine nucleotide-binding protein subunit beta-like protein-like protein n=2 Tax=Medicago truncatula RepID=G7J4P6_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K7L7 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7L7_SOYBN | SoyBase | E_val: 0 | ISS |
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Glyma06g02910 not represented in the dataset |
Glyma06g02910 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g026400 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g02910.1 sequence type=CDS gene model=Glyma06g02910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGAGCAGAAGGCCACCACCTGATCCTGTGGCAGTGTTACGTGGCCATCGAGCTTCGGTCACAGACATTTCTTTTCATCCCTCTAAGCCAATATTATTCTCCGGTTCTGCTGATGGTGAAGTGCGGATTTGGGATACACTTCAGCATCGGACAGTGTCATCAGCATGGTTACATAGTGCCGCACATGGTATTGTTGCTGTTGCTGGTAGTTCTTCCCTTGGAAACAATAAATTTGTCAGCCAGGGTAGGGATGGAACTGTAAAAGTTTGGGAACTTGGTGATGCTGGTTTGTCCAGGATTCCAGTACTTACAATCAAGACAAATACTTACCACTTTTGCAAGTTTTCCATGGTGAAGAAGCATTCTGTTTGGTCAAAAGAAGGGAAAGCATCAGAAGATTCCTATAGATCAGAGCTAGGAGGAGTGCCTGATAGAGAAATTCTGGAGGATAGAAGAGAAGAGGCTTATACCAATCAAAGTTGTTCTGAAAGCTTTGGAGAAAATATGTATAATGAAGGGCTACAATATGTGGCTTTGTCAGGGGAAAAGTCCTCTGAGGTTGAAATTTGGGATCTCAAGTCAGCTGAAAAAGTTGTACAACTCCCTTCAAGCAATCCTAGTAACTCTTCAAGTCCTTGCAACAAAGGGATGTGCATGGCACTTCAATTATTTTTACCGTCTGAATCACAAGGATTTTTAAATGTCTTGGCTGGATATGAGGATGGTTCCATGCTTTGGTGGGATGTACGGAATCCCGGAGTTCCAGTAACTTCTGTAAAATTCCATTCTGAGCCAGTTCTGAGCGTCTGTAATGATGGGTCTTGCAAAGGGGGTATCTCAGGAGCTGCAGATGACAAAATTGTAATGTACAGCTTGGATCATTCTTCGGGTACATGTGTGGTCAAGAAAGAAATCAGTTTGGATCGACCGGGCATCTCAGGCACCTCAATTCGGCCTGATGGAAAAATTGCTGCAACTGCTGGCTGGGACCACAGGTTGAGGATATATAATTACCGCAAAGGAAATGCTTTAGCTATTTTAAAGTATCACCATGGCACATGCAATGCTGTAACTTATTCGTCTGATTGTAAGCTTATGGCCTCTGCATCGGAGGACACAACCGTGGGGCTATGGGAATTGTATCCTCCTCGAATATGA
>Glyma06g02910.1 sequence type=predicted peptide gene model=Glyma06g02910 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MSRRPPPDPVAVLRGHRASVTDISFHPSKPILFSGSADGEVRIWDTLQHRTVSSAWLHSAAHGIVAVAGSSSLGNNKFVSQGRDGTVKVWELGDAGLSRIPVLTIKTNTYHFCKFSMVKKHSVWSKEGKASEDSYRSELGGVPDREILEDRREEAYTNQSCSESFGENMYNEGLQYVALSGEKSSEVEIWDLKSAEKVVQLPSSNPSNSSSPCNKGMCMALQLFLPSESQGFLNVLAGYEDGSMLWWDVRNPGVPVTSVKFHSEPVLSVCNDGSCKGGISGAADDKIVMYSLDHSSGTCVVKKEISLDRPGISGTSIRPDGKIAATAGWDHRLRIYNYRKGNALAILKYHHGTCNAVTYSSDCKLMASASEDTTVGLWELYPPRI*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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