Glyma06g02860 - SoyBase

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Report for Sequence Feature Glyma06g02860

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1981006
stop:	1984792
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02860

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G38900	AT	Annotation by Michelle Graham. TAIR10: Basic-leucine zipper (bZIP) transcription factor family protein \| chr4:18139564-18141520 REVERSE LENGTH=547	SoyBase	E_val: 4.00E-52	ISS
GO:0006355	GO-bp	Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent	SoyBase	N/A	ISS
GO:0009410	GO-bp	Annotation by Michelle Graham. GO Biological Process: response to xenobiotic stimulus	SoyBase	N/A	ISS
GO:0030968	GO-bp	Annotation by Michelle Graham. GO Biological Process: endoplasmic reticulum unfolded protein response	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0003677	GO-mf	Annotation by Michelle Graham. GO Molecular Function: DNA binding	SoyBase	N/A	ISS
GO:0003700	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity	SoyBase	N/A	ISS
GO:0043565	GO-mf	Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding	SoyBase	N/A	ISS
GO:0046983	GO-mf	Annotation by Michelle Graham. GO Molecular Function: protein dimerization activity	SoyBase	N/A	ISS
PTHR13301	Panther	X-BOX TRANSCRIPTION FACTOR-RELATED	JGI		ISS
UniRef100_I1K7L2	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7L2_SOYBN	SoyBase	E_val: 0	ISS
UniRef100_Q0GPE5	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: BZIP transcription factor bZIP11 n=1 Tax=Glycine max RepID=Q0GPE5_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02860

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02860

Paralog	Evidence	Comments
Glyma04g02850	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02860 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g026000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02860

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma06g02860

Limit To All Plant Sequences

>Glyma06g02860.2   sequence type=transcript   gene model=Glyma06g02860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
CAAAGAAGTTAAGCAGACAAGACAAAGACCATGAGATGATAGTAGTAAGAACCATGGTGAGAAGAAGAATTATTATTACACACAAAACAAACACAACATTGAATTCCCAAAATGAAATCACAAACACTGAAACACAACACACATGGTTGAGGTTGCTGCTCTAGACAGTTCTGCTACTCTTACGCAACTGGATTTTCTTCTTTGCCGAGATAGGGTTTTCAGTATTATTCTCTGCTCTCTCTCTCACCAGGTACTACTGTCTTTGCTATAGCCCTTGATCGTGTCAATTAGATTGTTTTTTCAAATTCGAGGGTTAATTGATTGATAGTGGTGATTGGTGAGTGGAAGCATAGTTAGTTGAGTCAATGGAAGGTGTTGATCAAAGAAATAGTTCTGCATTTGGTGTTCCAGTTCCAAGACCACCAAACCAGAAACATGGTATACCACCCTCTCACCCTAATATCAATATTTCACCTTCAGCAACTCCTTGTTCCCGATATTCTCAGCGATTGCGTTCTCCGGGTTCCTCCCATTCGAGGTCTTTGTCTCAATCTCCCATTTTCTCGTTGGATTCATTGCCCCCATTGAGTCCTTCACCTTCTGCTGTTACCTCCATGTTTGACTCAATCTCAACAACTGATATGTCCGTGGAGGAAAGTAATGTTTCCTCTCAGGTGCCCCTCAATGCAGTGCATGCCCTTCTTCCTCCTATGAAGGGACACAGGCGCTCTAGCAGTGATTCCCCTTTGGGAATCTCTGGTTTTATGCAGTCTTCTCCGGTTAGCTCGGGAGGAGAGAGCTTGGGGTTTGAGAAGCCGATTCAGCTGGTCTTGAAGGCGTCGTTTAGGGACGGCCTGGATGGGGACCGTGCTAATGAGCCTGTGAATGGGAGGAAGGAGGAGGCTACGGATGATTTGTTTAGGAAATACATGAATTTGGACAGCTTTGATAATCTGAACTTTCCTGGCATGGAAGATAAGGATTTGGATAGCAGGAACAGTGGTTCCAAGACGATTGAGAGCAGCGATAATGAAGTTGAGAGTCATGTGAATGGGAAGGTGAGTGGGGCTCAGGGGGCAAGTTCAAGCTGCTTGGAGGAAAGGAGGGAAGGAGCCAAGAGGAGTTCAAATGGAGACATTGCACCGGGTTCCCGGCACCGGAGGAGTTTTTCGTTGGATAGTTCCATAGGGAGCTTTAACATTGAAGATGGATTGCCTAAGCTTCCTCCTTCCAAAAATCAAATTGCTCAGCACTCACCTAGCAATTCAATGGATGGCAAAATGTCTGAAACCTCCACGGAATTTGGAAATGGCGAATTTAGTGCAGAGGAGGTAAAGAAAATAATGGAAAGTGATAAATTAGCTGAAATTGCTTCGATTGATCCCAAACGTGCAAAAAGGATTTTGGCTAATCGTCAATCAGCTGCTCGTTCAAAGGAGAGGAAGATGTGATACATTGCTGAATTGGAACACAAGGTGCAAACTCTTCAGACAGAAACAACCACATTGTCTACTCAGTTTACCAAATTACAGCTTTGAATGAGACTTTGGATGCTGAAGTCCGGCGTTTGAGGCGTGCTGTTTCCGAACTTGGCAGGGAATCCCTCACGAGTTGCATGGATCGACAACTTGCTATTAACCAACAAATGTTCCAGTTACAACATCAACAGCCCAGCCAGCACAAACATTTTCTACTGCAAAATCACCATAATCAGGAAGAGATACAGTCTTGGTCACAACAGATTCAAGGCAATGAATTGCATCCCCAGGCACAGATTCAGTAACAGCAGATTCAACGCAATGCATTGCATCCCCAGCCTTAAATTGCATAGCATTATTGCCTACTAATGGTGCCAAATAGTGGAAGCAGAATACCTTTTTTTTCAAACCAATATCAAATACTTTTGGACGTGGAGCTGGTGAGGTATGAGTATAATCAATCGTACATAAGCAGTGATCTAGCATTAGTTTGCTTGTAGTTTCATAAGATTTGTTCATCATCTTTATTTAATTTGTTATTTTGACTGTTTTACCCGCATATAAACTCGAACTATTCTATTCTTGTTAGTAAACCTTATTGTCATGAATACAACCCACCTTTCTCTATTGAGAGGGTCCATGTTGTTGCATAATCTATG

Coding sequences of Glyma06g02860

Limit To All Plant Sequences

>Glyma06g02860.1   sequence type=CDS   gene model=Glyma06g02860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTGTTGATCAAAGAAATAGTTCTGCATTTGGTGTTCCAGTTCCAAGACCACCAAACCAGAAACATGGTATACCACCCTCTCACCCTAATATCAATATTTCACCTTCAGCAACTCCTTGTTCCCGATATTCTCAGCGATTGCGTTCTCCGGGTTCCTCCCATTCGAGGTCTTTGTCTCAATCTCCCATTTTCTCGTTGGATTCATTGCCCCCATTGAGTCCTTCACCTTCTGCTGTTACCTCCATGTTTGACTCAATCTCAACAACTGATATGTCCGTGGAGGAAAGTAATGTTTCCTCTCAGGTGCCCCTCAATGCAGTGCATGCCCTTCTTCCTCCTATGAAGGGACACAGGCGCTCTAGCAGTGATTCCCCTTTGGGAATCTCTGGTTTTATGCAGTCTTCTCCGGTTAGCTCGGGAGGAGAGAGCTTGGGGTTTGAGAAGCCGATTCAGCTGGTCTTGAAGGCGTCGTTTAGGGACGGCCTGGATGGGGACCGTGCTAATGAGCCTGTGAATGGGAGGAAGGAGGAGGCTACGGATGATTTGTTTAGGAAATACATGAATTTGGACAGCTTTGATAATCTGAACTTTCCTGGCATGGAAGATAAGGATTTGGATAGCAGGAACAGTGGTTCCAAGACGATTGAGAGCAGCGATAATGAAGTTGAGAGTCATGTGAATGGGAAGGTGAGTGGGGCTCAGGGGGCAAGTTCAAGCTGCTTGGAGGAAAGGAGGGAAGGAGCCAAGAGGAGTTCAAATGGAGACATTGCACCGGGTTCCCGGCACCGGAGGAGTTTTTCGTTGGATAGTTCCATAGGGAGCTTTAACATTGAAGATGGATTGCCTAAGCTTCCTCCTTCCAAAAATCAAATTGCTCAGCACTCACCTAGCAATTCAATGGATGGCAAAATGTCTGAAACCTCCACGGAATTTGGAAATGGCGAATTTAGTGCAGAGGAGGTAAAGAAAATAATGGAAAGTGATAAATTAGCTGAAATTGCTTCGATTGATCCCAAACGTGCAAAAAGGATTTTGGCTAATCGTCAATCAGCTGCTCGTTCAAAGGAGAGGAAGATGTGA

>Glyma06g02860.2   sequence type=CDS   gene model=Glyma06g02860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAAGGTGTTGATCAAAGAAATAGTTCTGCATTTGGTGTTCCAGTTCCAAGACCACCAAACCAGAAACATGGTATACCACCCTCTCACCCTAATATCAATATTTCACCTTCAGCAACTCCTTGTTCCCGATATTCTCAGCGATTGCGTTCTCCGGGTTCCTCCCATTCGAGGTCTTTGTCTCAATCTCCCATTTTCTCGTTGGATTCATTGCCCCCATTGAGTCCTTCACCTTCTGCTGTTACCTCCATGTTTGACTCAATCTCAACAACTGATATGTCCGTGGAGGAAAGTAATGTTTCCTCTCAGGTGCCCCTCAATGCAGTGCATGCCCTTCTTCCTCCTATGAAGGGACACAGGCGCTCTAGCAGTGATTCCCCTTTGGGAATCTCTGGTTTTATGCAGTCTTCTCCGGTTAGCTCGGGAGGAGAGAGCTTGGGGTTTGAGAAGCCGATTCAGCTGGTCTTGAAGGCGTCGTTTAGGGACGGCCTGGATGGGGACCGTGCTAATGAGCCTGTGAATGGGAGGAAGGAGGAGGCTACGGATGATTTGTTTAGGAAATACATGAATTTGGACAGCTTTGATAATCTGAACTTTCCTGGCATGGAAGATAAGGATTTGGATAGCAGGAACAGTGGTTCCAAGACGATTGAGAGCAGCGATAATGAAGTTGAGAGTCATGTGAATGGGAAGGTGAGTGGGGCTCAGGGGGCAAGTTCAAGCTGCTTGGAGGAAAGGAGGGAAGGAGCCAAGAGGAGTTCAAATGGAGACATTGCACCGGGTTCCCGGCACCGGAGGAGTTTTTCGTTGGATAGTTCCATAGGGAGCTTTAACATTGAAGATGGATTGCCTAAGCTTCCTCCTTCCAAAAATCAAATTGCTCAGCACTCACCTAGCAATTCAATGGATGGCAAAATGTCTGAAACCTCCACGGAATTTGGAAATGGCGAATTTAGTGCAGAGGAGGTAAAGAAAATAATGGAAAGTGATAAATTAGCTGAAATTGCTTCGATTGATCCCAAACGTGCAAAAAGGATTTTGGCTAATCGTCAATCAGCTGCTCGTTCAAAGGAGAGGAAGATGTGA

Predicted protein sequences of Glyma06g02860

Limit To All Plant Sequences

>Glyma06g02860.1   sequence type=predicted peptide   gene model=Glyma06g02860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGVDQRNSSAFGVPVPRPPNQKHGIPPSHPNINISPSATPCSRYSQRLRSPGSSHSRSLSQSPIFSLDSLPPLSPSPSAVTSMFDSISTTDMSVEESNVSSQVPLNAVHALLPPMKGHRRSSSDSPLGISGFMQSSPVSSGGESLGFEKPIQLVLKASFRDGLDGDRANEPVNGRKEEATDDLFRKYMNLDSFDNLNFPGMEDKDLDSRNSGSKTIESSDNEVESHVNGKVSGAQGASSSCLEERREGAKRSSNGDIAPGSRHRRSFSLDSSIGSFNIEDGLPKLPPSKNQIAQHSPSNSMDGKMSETSTEFGNGEFSAEEVKKIMESDKLAEIASIDPKRAKRILANRQSAARSKERKM*

>Glyma06g02860.2   sequence type=predicted peptide   gene model=Glyma06g02860   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEGVDQRNSSAFGVPVPRPPNQKHGIPPSHPNINISPSATPCSRYSQRLRSPGSSHSRSLSQSPIFSLDSLPPLSPSPSAVTSMFDSISTTDMSVEESNVSSQVPLNAVHALLPPMKGHRRSSSDSPLGISGFMQSSPVSSGGESLGFEKPIQLVLKASFRDGLDGDRANEPVNGRKEEATDDLFRKYMNLDSFDNLNFPGMEDKDLDSRNSGSKTIESSDNEVESHVNGKVSGAQGASSSCLEERREGAKRSSNGDIAPGSRHRRSFSLDSSIGSFNIEDGLPKLPPSKNQIAQHSPSNSMDGKMSETSTEFGNGEFSAEEVKKIMESDKLAEIASIDPKRAKRILANRQSAARSKERKM*

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