Glyma06g02830 - SoyBase

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Report for Sequence Feature Glyma06g02830

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1944804
stop:	1949899
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02830

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G19860	AT	Annotation by Michelle Graham. TAIR10: Zinc finger C-x8-C-x5-C-x3-H type family protein \| chr1:6891654-6894400 REVERSE LENGTH=413	SoyBase	E_val: 5.00E-89	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003676	GO-mf	Annotation by Michelle Graham. GO Molecular Function: nucleic acid binding	SoyBase	N/A	ISS
GO:0008270	GO-mf	Annotation by Michelle Graham. GO Molecular Function: zinc ion binding	SoyBase	N/A	ISS
PTHR23102	Panther	ZINC FINGER (CLIPPER)-RELATED	JGI		ISS
PTHR23102:SF17	Panther	ZINC FINGER (CCCH-TYPE) FAMILY PROTEIN	JGI		ISS
UniRef100_G7I2D9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Zinc finger CCCH domain-containing protein n=1 Tax=Medicago truncatula RepID=G7I2D9_MEDTR	SoyBase	E_val: 2.00E-151	ISS
UniRef100_I1K7K9	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein (Fragment) n=2 Tax=Glycine max RepID=I1K7K9_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02830

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02830

Paralog	Evidence	Comments
Glyma04g02820	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02830 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g025700	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02830

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g02830

Limit To All Plant Sequences

>Glyma06g02830.1   sequence type=CDS   gene model=Glyma06g02830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGCGTCGATTGCAAAAATCGAAACGAGTTTCATGGGCCTCCGATTTAGATCTTTGTCAGGTTAGGCTATTCTTATCAGAGGAATCTCCTTCACAGGTTGGGTTAAATTCTCAAGACCACGTCCAAGCAAAGACATCATTGCTGTTGCATCCAGATGGAGCAGGTTCTGACGACATTCTGCCTCCTGGATTTGAGGGAACTCATGCTAAAAGTCAGTCCGAGATTAAGCTATCCCAAATACCAGTTATTAAATGGATTACTCCTCCAAAGATTGAGGTAAATCCCACATGGCGAGTAGCGGTTGGGGAAGAAAGCACAGAGGTAGAGGATCAACCTCAGAGGGAGATGAGAGTACTTGAAGCTATTTATCCTCGAATATCTTCCATTCCTCAAAACCCTTCTGTTTCAATGGATGTTGAAGAGTCCCATTGCATGGATGATCAAACTGCTTTGATACCAATAACACCAATTGAAGAAGAAGAAGCAGCAGCAAAAGCATTAATGGATTCCTTGAAACCATTTGATGTTTCACAATCTCTTCAATTAGCTCCTGGTATTCTTAAGGATTCAAACTCTGCTACAAGTATGCAGTTAGCTTGTGGTCTTGCATCTGATGTAGTTGCTGCTGCATTTGTTGCTTTAACTAGCCTTGTGAAGAGAAATGAACATGGAAATTTTATTGACCATGAATCAGTTAATCATATTCTCAACAATCCAGAAGTGATCGTGAAGTTGGTTAGAGATTATAGAGCTGCTAATAATTCACAATATGTACATAATGCGGGGTCATCCTTGGCGGCCTTTTCAAATCCATCGATTCCTATTCAAGGAGAAACCACTACACCTTCATCGGTTGTTTTTTCAGGCACTTCTTCCTATGCTCCCCCAATTGGAGGTCTGGTGGAACCTATTACTACCCAATGGCCTCCTAGGCCTGCAATGAGTTCAGCTATTGTTTCTTCTTCCATTGAGGTCCCTCCTGCAAGAAATGTAAACTACTATAAGAGCTTAATTCAACAACATGGAGGAGATAAACAAGAAACACTTCCATACTCCAGTAAACGTCAGATTCCTCAGTCAGCAACAAACTATGAGACAACCTCCTACAATCATAGAGGTAAAGTATCAAAACCAAAGATAATGAAGCCTTGTATCTTTTTCAACACTTCTAAAGGATGTCGGAAGGGAGCTAACTGTGACTACCATCATGATGCATCATTTTAA

Predicted protein sequences of Glyma06g02830

Limit To All Plant Sequences

>Glyma06g02830.1   sequence type=predicted peptide   gene model=Glyma06g02830   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MRRLQKSKRVSWASDLDLCQVRLFLSEESPSQVGLNSQDHVQAKTSLLLHPDGAGSDDILPPGFEGTHAKSQSEIKLSQIPVIKWITPPKIEVNPTWRVAVGEESTEVEDQPQREMRVLEAIYPRISSIPQNPSVSMDVEESHCMDDQTALIPITPIEEEEAAAKALMDSLKPFDVSQSLQLAPGILKDSNSATSMQLACGLASDVVAAAFVALTSLVKRNEHGNFIDHESVNHILNNPEVIVKLVRDYRAANNSQYVHNAGSSLAAFSNPSIPIQGETTTPSSVVFSGTSSYAPPIGGLVEPITTQWPPRPAMSSAIVSSSIEVPPARNVNYYKSLIQQHGGDKQETLPYSSKRQIPQSATNYETTSYNHRGKVSKPKIMKPCIFFNTSKGCRKGANCDYHHDASF*

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