SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g02820

Feature Type:gene_model
Chromosome:Gm06
Start:1940733
stop:1942647
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g02820
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT5G39600AT Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Ribosomal protein L53, mitochondrial (InterPro:IPR019716); Has 50 Blast hits to 50 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 6; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). | chr5:15854188-15854771 REVERSE LENGTH=127 SoyBaseE_val: 1.00E-68ISS
GO:0000394GO-bp Annotation by Michelle Graham. GO Biological Process: RNA splicing, via endonucleolytic cleavage and ligation SoyBaseN/AISS
GO:0008150GO-bp Annotation by Michelle Graham. GO Biological Process: biological process SoyBaseN/AISS
GO:0009086GO-bp Annotation by Michelle Graham. GO Biological Process: methionine biosynthetic process SoyBaseN/AISS
GO:0005575GO-cc Annotation by Michelle Graham. GO Cellular Compartment: cellular component SoyBaseN/AISS
GO:0003674GO-mf Annotation by Michelle Graham. GO Molecular Function: molecular function SoyBaseN/AISS
UniRef100_I1K7K8UniRef Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7K8_SOYBN SoyBaseE_val: 2.00E-87ISS
UniRef100_I6LNS8UniRef Annotation by Michelle Graham. Most informative UniRef hit: Mitochondrial 39S ribosomal protein L53 n=1 Tax=Hevea brasiliensis RepID=I6LNS8_HEVBR SoyBaseE_val: 8.00E-56ISS

Expression Patterns of Glyma06g02820
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02820
ParalogEvidenceComments
Glyma04g02810 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02820 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g025600 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g02820
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Coding sequences of Glyma06g02820
>Glyma06g02820.1   sequence type=CDS   gene model=Glyma06g02820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGTTGAAATTCTTGTCGAGAGTGAAAATCGAGTTCAACGCGTTGGACCCGCGAACGGCGTCGTGTATGGAGTTTCTGGCGCAATGCAACTCGCGGAAGGCGAAGGAGTCGAACCCGGCGTGCGAAGTGGAGGTGAAGCGCGTGAGGGAAGAGCGCGCGCCGCAGATAACGGTGACGTTCGTTAACGGCGTTGAGGAAGTGTTCGACGCGACGGCGACGCCGGCTCAGAGCATACGAAACTTGATTCTGGAAAAGGGTCAGCACCTCGAGACGGAGCAGATGTTCCGCGAAGCTGGGGAACCCTGGCCCGTTGTCATCCCCGACGAGGAGCTCTCGCAAATCGCACCCCCTACCAAACCAAGGAAAGCAGAAGACAAGAAGCAATAG
Predicted protein sequences of Glyma06g02820
>Glyma06g02820.1   sequence type=predicted peptide   gene model=Glyma06g02820   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MLKFLSRVKIEFNALDPRTASCMEFLAQCNSRKAKESNPACEVEVKRVREERAPQITVTFVNGVEEVFDATATPAQSIRNLILEKGQHLETEQMFREAGEPWPVVIPDEELSQIAPPTKPRKAEDKKQ*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo