SoyBase
SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G75680 | AT | Annotation by Michelle Graham. TAIR10: glycosyl hydrolase 9B7 | chr1:28417215-28419231 REVERSE LENGTH=525 | SoyBase | E_val: 0 | ISS |
| GO:0000271 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide biosynthetic process | SoyBase | N/A | ISS |
| GO:0000272 | GO-bp | Annotation by Michelle Graham. GO Biological Process: polysaccharide catabolic process | SoyBase | N/A | ISS |
| GO:0005975 | GO-bp | Annotation by Michelle Graham. GO Biological Process: carbohydrate metabolic process | SoyBase | N/A | ISS |
| GO:0005982 | GO-bp | Annotation by Michelle Graham. GO Biological Process: starch metabolic process | SoyBase | N/A | ISS |
| GO:0006084 | GO-bp | Annotation by Michelle Graham. GO Biological Process: acetyl-CoA metabolic process | SoyBase | N/A | ISS |
| GO:0007389 | GO-bp | Annotation by Michelle Graham. GO Biological Process: pattern specification process | SoyBase | N/A | ISS |
| GO:0008361 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell size | SoyBase | N/A | ISS |
| GO:0009664 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall organization | SoyBase | N/A | ISS |
| GO:0009736 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cytokinin mediated signaling pathway | SoyBase | N/A | ISS |
| GO:0009825 | GO-bp | Annotation by Michelle Graham. GO Biological Process: multidimensional cell growth | SoyBase | N/A | ISS |
| GO:0009832 | GO-bp | Annotation by Michelle Graham. GO Biological Process: plant-type cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0009926 | GO-bp | Annotation by Michelle Graham. GO Biological Process: auxin polar transport | SoyBase | N/A | ISS |
| GO:0009932 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell tip growth | SoyBase | N/A | ISS |
| GO:0010015 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root morphogenesis | SoyBase | N/A | ISS |
| GO:0010075 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of meristem growth | SoyBase | N/A | ISS |
| GO:0010817 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of hormone levels | SoyBase | N/A | ISS |
| GO:0016126 | GO-bp | Annotation by Michelle Graham. GO Biological Process: sterol biosynthetic process | SoyBase | N/A | ISS |
| GO:0016132 | GO-bp | Annotation by Michelle Graham. GO Biological Process: brassinosteroid biosynthetic process | SoyBase | N/A | ISS |
| GO:0040007 | GO-bp | Annotation by Michelle Graham. GO Biological Process: growth | SoyBase | N/A | ISS |
| GO:0042546 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall biogenesis | SoyBase | N/A | ISS |
| GO:0043481 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anthocyanin accumulation in tissues in response to UV light | SoyBase | N/A | ISS |
| GO:0048653 | GO-bp | Annotation by Michelle Graham. GO Biological Process: anther development | SoyBase | N/A | ISS |
| GO:0048767 | GO-bp | Annotation by Michelle Graham. GO Biological Process: root hair elongation | SoyBase | N/A | ISS |
| GO:0071555 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell wall organization | SoyBase | N/A | ISS |
| GO:0005576 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: extracellular region | SoyBase | N/A | ISS |
| GO:0005886 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: plasma membrane | SoyBase | N/A | ISS |
| GO:0003824 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: catalytic activity | SoyBase | N/A | ISS |
| GO:0004553 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: hydrolase activity, hydrolyzing O-glycosyl compounds | SoyBase | N/A | ISS |
| PTHR22298 | Panther | ENDO-1,4-BETA-GLUCANASE | JGI | ISS | |
| PF00759 | PFAM | Glycosyl hydrolase family 9 | JGI | ISS | |
| UniRef100_G7J4Q1 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Endoglucanase n=1 Tax=Medicago truncatula RepID=G7J4Q1_MEDTR | SoyBase | E_val: 0 | ISS |
| UniRef100_I1K7K4 | UniRef | Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K7K4_SOYBN | SoyBase | E_val: 0 | ISS |
|
Glyma06g02760 not represented in the dataset |
Glyma06g02760 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g02740 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g025100 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g02760.1 sequence type=CDS gene model=Glyma06g02760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGGAGAAAAATCGAGGTCCAAAGGAGGGTGCTGCGGTTGGTTCATCGCGTTCGTCATTCTGGCTCTCGTCGTCGGTGCCATTGTTTTTACCGTTAAGAAGAAATTTAGTCACTCCGGTTCCGATAAGCCTGCTCCTGTTCCCGGTCCCCCTGGCGCCGTTGACCAAAAATACTCCACTGCACTCAAAACCGCAATGCAATTCTTCGATGTTCAGAAATCTGGGAGGTTAGTTGACAATAAAATATCTTGGAGAGGGAATTCGGCTCTTAAGGATGGGAGCCAAGCGAAGTTGGATCTATCAAAAGGGATGTATGATGCTGGGGATAACATGAAGTTTGGTTTTCCGATGGCTTTTACGGCCACGGTGCTGTCTTGGTCCATTCTGGAATATGGAGATCAAATGGATCACGTTGGCCAGTTAGACGCCGCTCAGGATTCGCTCAAGTGGATCACTGATTTTCTCATCAATGCTCACCCTTCTGAGAATGTTCTTTATATTCAGGTGGGTGATCCTGTTGCAGATCACAAGTGTTGGGAAAAACCAGAAGCCATGACTGAGGAACGTCCACTCTTACAAGTGAATGCATCTTGTCCAGGATCAGACATTGCAGCTGAAACTGCAGCAGCCATGGCCTCAGCTTCTTTGGTCTTTAAAAAGACTGATCCTACATATTCAAGCACTCTCCTCAAGCATGCAAAACAGTTGTTTACTTTTGCTGACAAGAATAGAGGATCTTATAGTGAGAATATACCCGAAGTTGCGACATATTATAACTCAACTGGATATGGTGATGAGCTTTTATGGGCTGCTAGCTGGCTCTATCATGCTACGGGTGATGATTCTTACCTTCAGTTTGTGACTGGCCAAGATGGGGAAGACTATGCTCAATGGGGAAGCCCAACCTGGTTCAGTTGGGATAACAAGCTTGCTGGAACTCAGGTTTTGTTATCTAGATTAAGCTTTTTTAAGGCAAAGGACATTTCAAATTCGTATAGCTCTGGGCTCCATAGTTACAGGAAAACTGCTGAGGCTGTAATGTGTGGTCTTCTTCCGGATTCTCCAACAGCCACAAAAAGCAGAACAGATGATGGTCTTATATGGGTGAGTCAATGGAACTCTTTGCAACATCCTGTTGCATCTGCATTCTTAGCTGCTGTTTACAGTGACTATATGCTAACATCGCAGACACCAAAACTAAAATGTGATTCAGATTCCTTTACCCCATCAGATCTTCGAGACTTTGCCAAATCTCAGGCTGATTACGTATTGGGCAAGAATCCTATGCATATGAGTTTTCTGGTGGGCTATGGAGATAAATACCCACAATTTGTGCATCATAGGGGTGCTTCAATTCCTGCTGATGCAAAAACTGGCTGCAAGGATGGCTTCCAGTGGCTTGAATCATCTGATCCTAATCCCAATGTAGCTACTGGAGCACTTGTTGGTGGACCCTTCTTAAATGAGACTTTCATTGATTCCAGGAACAATTCCATGCAAACAGAACCAAGCACGTACAACAGTGCTGTCATAGTCGGTCTCTTATCAAGTTTAGTCACCACGTCTTCTGCCGTTCAATCCTTTACCTAA
>Glyma06g02760.1 sequence type=predicted peptide gene model=Glyma06g02760 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MGEKSRSKGGCCGWFIAFVILALVVGAIVFTVKKKFSHSGSDKPAPVPGPPGAVDQKYSTALKTAMQFFDVQKSGRLVDNKISWRGNSALKDGSQAKLDLSKGMYDAGDNMKFGFPMAFTATVLSWSILEYGDQMDHVGQLDAAQDSLKWITDFLINAHPSENVLYIQVGDPVADHKCWEKPEAMTEERPLLQVNASCPGSDIAAETAAAMASASLVFKKTDPTYSSTLLKHAKQLFTFADKNRGSYSENIPEVATYYNSTGYGDELLWAASWLYHATGDDSYLQFVTGQDGEDYAQWGSPTWFSWDNKLAGTQVLLSRLSFFKAKDISNSYSSGLHSYRKTAEAVMCGLLPDSPTATKSRTDDGLIWVSQWNSLQHPVASAFLAAVYSDYMLTSQTPKLKCDSDSFTPSDLRDFAKSQADYVLGKNPMHMSFLVGYGDKYPQFVHHRGASIPADAKTGCKDGFQWLESSDPNPNVATGALVGGPFLNETFIDSRNNSMQTEPSTYNSAVIVGLLSSLVTTSSAVQSFT*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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