SoyBase SoyBase transitions to NEW site on 10/1/2024
Integrating Genetics and Genomics to Advance Soybean Research

Report for Sequence Feature Glyma06g02738

Feature Type:gene_model
Chromosome:Gm06
Start:1845183
stop:1849128
Source:JGI
Version:Wm82.a1.v1.1
High confidence:yes



A newer version of this gene model can be found here:

Annotations for Glyma06g02738
Database IDAnnotation TypeAnnotation DescriptionAnnotation SourceMatch ScoreEvidence Code
AT1G47870AT Annotation by Michelle Graham. TAIR10: winged-helix DNA-binding transcription factor family protein | chr1:17634937-17637557 FORWARD LENGTH=395 SoyBaseE_val: 1.00E-90ISS
GO:0000902GO-bp Annotation by Michelle Graham. GO Biological Process: cell morphogenesis SoyBaseN/AISS
GO:0006302GO-bp Annotation by Michelle Graham. GO Biological Process: double-strand break repair SoyBaseN/AISS
GO:0006355GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent SoyBaseN/AISS
GO:0010090GO-bp Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis SoyBaseN/AISS
GO:0010332GO-bp Annotation by Michelle Graham. GO Biological Process: response to gamma radiation SoyBaseN/AISS
GO:0042023GO-bp Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication SoyBaseN/AISS
GO:0051301GO-bp Annotation by Michelle Graham. GO Biological Process: cell division SoyBaseN/AISS
GO:0051302GO-bp Annotation by Michelle Graham. GO Biological Process: regulation of cell division SoyBaseN/AISS
GO:0051782GO-bp Annotation by Michelle Graham. GO Biological Process: negative regulation of cell division SoyBaseN/AISS
GO:0005634GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleus SoyBaseN/AISS
GO:0005667GO-cc Annotation by Michelle Graham. GO Cellular Compartment: transcription factor complex SoyBaseN/AISS
GO:0005730GO-cc Annotation by Michelle Graham. GO Cellular Compartment: nucleolus SoyBaseN/AISS
GO:0003677GO-mf Annotation by Michelle Graham. GO Molecular Function: DNA binding SoyBaseN/AISS
GO:0003700GO-mf Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity SoyBaseN/AISS
GO:0005515GO-mf Annotation by Michelle Graham. GO Molecular Function: protein binding SoyBaseN/AISS
GO:0046982GO-mf Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity SoyBaseN/AISS
PTHR12081Panther E2F JGI ISS
PTHR12081:SF18Panther E2F4,5 JGI ISS
PF02319PFAM E2F/DP family winged-helix DNA-binding domain JGI ISS
UniRef100_G7J4Q9UniRef Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor E2F5 n=1 Tax=Medicago truncatula RepID=G7J4Q9_MEDTR SoyBaseE_val: 3.00E-137ISS
UniRef100_UPI00023398DEUniRef Annotation by Michelle Graham. Best UniRef hit: UPI00023398DE related cluster n=1 Tax=unknown RepID=UPI00023398DE SoyBaseE_val: 0ISS

Expression Patterns of Glyma06g02738
Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology

Glyma06g02738 not represented in the dataset
Glyma06g02738 not represented in the dataset
Libault et al. 2010, Plant Phys 152(2):541-552.
Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection 		Severin et al. 2010, BMC Plant Biology 10:160
RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02738
ParalogEvidenceComments
Glyma04g02720 IGC Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02738 Gene Call Version Wm82.a1.v1.1
Corresponding NameAnnotation VersionEvidenceComments
Glyma.06g024900 Wm82.a2.v1IGC As supplied by JGI

References for Glyma06g02738
Schmutz et al. 2010
  Genome sequence of the palaeopolyploid soybean
  Nature 2010, 463:178-183

Transcripts of Glyma06g02738
>Glyma06g02738.2   sequence type=transcript   gene model=Glyma06g02738   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTACGTGAGAGAAGCCCAAAAAGGAGCCCAGAAAGTGAGGCCCAAAAGGAAAAGAAAAGGGCGGGGTGGCGTGTGCATTCGAACTGAACTGACCGCTTTTTTTGCGTTGGTGTTGGCGGCCACACCGTATCAAACTTTCACTTTCACTTCTCTTTTCTCTTTCCTATTGCTATATATAACAGTCTTACTGTTTCACACACAAACCCTCTCTCTCGTATCTTCCATCTCACTTCAAATTCATTCTCCCTTTCCTAATATGAGTCAAAGATATGACAACAATGTTTTCAAATCTCACATAAATAATATCCAACTTGCTCCTGGTATCACCGAAACACTTCATCTTCCTCCCCCACTTCAAACCGAGCCTACCATAAGAGGAAAGCAAAATGGTAAATCAAAAGGTCCAAGAAATGCAAAATCTGCGAATGCCGATTCCCCTAATTCGACTGCAGTTAACAATTGTCGCTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTGAGCTTAATCCAGGATGCTAAGGATGGAACGCTGGATCTAAATAGAACCGCCGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGGGTAGGATTGATAGAGAAAACATCAAAGAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCTCAAGAACTGGAAGACCAAGTTAATAGTCTAAAGGCAGAAGTTGATAGTCTATATGCCGAGGAATCCGAACTGGATGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGGAGGAAAGCGAAAGCTCTCAAAAGTACCTTTTTTTAACCAAGGAAGATATTCTTAGCCTTCCCTGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTGCATCGAGGTCCCTGATCCTGATGAGGAATTAGGTTTTCGGCAAAGGCAGTACAAAATGATTGTTCGAAGTGCCATTGGACCAATAAATTTGTATCTCTTGAGCAAGGACGACAGCAAGTTTGAGGATGATAGTGCCAAACGGATGAAATTAATGGATCCATCATGGAATAGTGATCCCATCAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAACATGATGAAAAAAATCCTTCTGAGCATTTCAGTTTGCAGGGTTCACAAGCATTTGGAATTCAAGAAATTACTCCCACGGATTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCAAACAGAATTGAAATGAGTAGTTGGTTCAGATAGATGTGCTTCAAGACGATTAATCCAATAAGAAGTGTGGGATTTGCTTGAACACAAGCTTCACTAACAGATACGATTAATAAGAGATAGACTTTTAATTGTTCCAGACGGCACACAGGGTACATTTCAAACTGTAAATTTTAGCTCTTTTTTTTGGCTCTTTTCTATCAGCAGTTGCCTTAACTAGGATAATTGTGTCCTAGTTCTACAATGTAACTTATGAATGAATAAGATTGAGATATAACTTCTAAAATAGAATTGTTTCAAACCTATTATAGCTTTACATGGACAAAGCCATAAATCCTCTCCCAATAAAGTTTCAAACTATCTAGGATAATTGCACTTTTTT
Coding sequences of Glyma06g02738
>Glyma06g02738.1   sequence type=CDS   gene model=Glyma06g02738   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTACGTGAGAGAAGCCCAAAAAGGAGCCCAGAAAGTGAGGCCCAAAAGGAAAAGAAAAGGGCGGGGTGGCGTGTGCATTCGAACTGAACTGACCGCTTTTTTTGCGTTGGTGTTGGCGGCCACACCGTATCAAACTTTCACTTTCACTTCTCTTTTCTCTTTCCTATTGCTATATATAACAGTCTTACTGTTTCACACACAAACCCTCTCTCTCGTATCTTCCATCTCACTTCAAATTCATTCTCCCTTTCCTAATATGAGTCAAAGATATGACAACAATGTTTTCAAATCTCACATAAATAATATCCAACTTGCTCCTGGTATCACCGAAACACTTCATCTTCCTCCCCCACTTCAAACCGAGCCTACCATAAGAGGAAAGCAAAATGGTAAATCAAAAGGTCCAAGAAATGCAAAATCTGCGAATGCCGATTCCCCTAATTCGACTGCAGTTAACAATTGTCGCTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTGAGCTTAATCCAGGATGCTAAGGATGGAACGCTGGATCTAAATAGAACCGCCGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGGGTAGGATTGATAGAGAAAACATCAAAGAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCTCAAGAACTGGAAGACCAAGTTAATAGTCTAAAGGCAGAAGTTGATAGTCTATATGCCGAGGAATCCGAACTGGATGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGGAGGAAAGCGAAAGCTCTCAAAAGTACCTTTTTTTAACCAAGGAAGATATTCTTAGCCTTCCCTGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTGCATCGAGGTCCCTGATCCTGATGAGGAATTAGGTTTTCGGCAAAGGCAGTACAAAATGATTGTTCGAAGTGCCATTGGACCAATAAATTTGTATCTCTTGAGCAAGGACGACAGCAAGTTTGAGGATGATAGTGCCAAACGGATGAAATTAATGGATCCATCATGGAATAGTGATCCCATCAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAACATGATGAAAAAAATCCTTCTGAGCATTTCAGTTTGCAGGGTTCACAAGCATTTGGAATTCAAGAAATTACTCCCACGGATTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCAAACAGAATTGTGGGGAAATGAGTAG

>Glyma06g02738.2   sequence type=CDS   gene model=Glyma06g02738   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGTTTACGTGAGAGAAGCCCAAAAAGGAGCCCAGAAAGTGAGGCCCAAAAGGAAAAGAAAAGGGCGGGGTGGCGTGTGCATTCGAACTGAACTGACCGCTTTTTTTGCGTTGGTGTTGGCGGCCACACCGTATCAAACTTTCACTTTCACTTCTCTTTTCTCTTTCCTATTGCTATATATAACAGTCTTACTGTTTCACACACAAACCCTCTCTCTCGTATCTTCCATCTCACTTCAAATTCATTCTCCCTTTCCTAATATGAGTCAAAGATATGACAACAATGTTTTCAAATCTCACATAAATAATATCCAACTTGCTCCTGGTATCACCGAAACACTTCATCTTCCTCCCCCACTTCAAACCGAGCCTACCATAAGAGGAAAGCAAAATGGTAAATCAAAAGGTCCAAGAAATGCAAAATCTGCGAATGCCGATTCCCCTAATTCGACTGCAGTTAACAATTGTCGCTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTGAGCTTAATCCAGGATGCTAAGGATGGAACGCTGGATCTAAATAGAACCGCCGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGGGTAGGATTGATAGAGAAAACATCAAAGAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCTCAAGAACTGGAAGACCAAGTTAATAGTCTAAAGGCAGAAGTTGATAGTCTATATGCCGAGGAATCCGAACTGGATGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGGAGGAAAGCGAAAGCTCTCAAAAGTACCTTTTTTTAACCAAGGAAGATATTCTTAGCCTTCCCTGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTGCATCGAGGTCCCTGATCCTGATGAGGAATTAGGTTTTCGGCAAAGGCAGTACAAAATGATTGTTCGAAGTGCCATTGGACCAATAAATTTGTATCTCTTGAGCAAGGACGACAGCAAGTTTGAGGATGATAGTGCCAAACGGATGAAATTAATGGATCCATCATGGAATAGTGATCCCATCAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAACATGATGAAAAAAATCCTTCTGAGCATTTCAGTTTGCAGGGTTCACAAGCATTTGGAATTCAAGAAATTACTCCCACGGATTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCAAACAGAATTGAAATGA
Predicted protein sequences of Glyma06g02738
>Glyma06g02738.1   sequence type=predicted peptide   gene model=Glyma06g02738   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVYVREAQKGAQKVRPKRKRKGRGGVCIRTELTAFFALVLAATPYQTFTFTSLFSFLLLYITVLLFHTQTLSLVSSISLQIHSPFPNMSQRYDNNVFKSHINNIQLAPGITETLHLPPPLQTEPTIRGKQNGKSKGPRNAKSANADSPNSTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPQELEDQVNSLKAEVDSLYAEESELDDCIRKKQELLRNLEESESSQKYLFLTKEDILSLPCFQNQEIIAIKAPKASCIEVPDPDEELGFRQRQYKMIVRSAIGPINLYLLSKDDSKFEDDSAKRMKLMDPSWNSDPIRKRGVGLLESQHDEKNPSEHFSLQGSQAFGIQEITPTDFEMEDDYWFQSDPGVSQTELWGNE*

>Glyma06g02738.2   sequence type=predicted peptide   gene model=Glyma06g02738   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MVYVREAQKGAQKVRPKRKRKGRGGVCIRTELTAFFALVLAATPYQTFTFTSLFSFLLLYITVLLFHTQTLSLVSSISLQIHSPFPNMSQRYDNNVFKSHINNIQLAPGITETLHLPPPLQTEPTIRGKQNGKSKGPRNAKSANADSPNSTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPQELEDQVNSLKAEVDSLYAEESELDDCIRKKQELLRNLEESESSQKYLFLTKEDILSLPCFQNQEIIAIKAPKASCIEVPDPDEELGFRQRQYKMIVRSAIGPINLYLLSKDDSKFEDDSAKRMKLMDPSWNSDPIRKRGVGLLESQHDEKNPSEHFSLQGSQAFGIQEITPTDFEMEDDYWFQSDPGVSQTELK*






Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA
 
USDA Logo
Iowa State University Logo