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Integrating Genetics and Genomics to Advance Soybean Research
SoyBase
SoyBase transitions to NEW site on 10/1/2024
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A newer version of this gene model can be found here:
| Database ID | Annotation Type | Annotation Description | Annotation Source | Match Score | Evidence Code |
|---|---|---|---|---|---|
| AT1G47870 | AT | Annotation by Michelle Graham. TAIR10: winged-helix DNA-binding transcription factor family protein | chr1:17634937-17637557 FORWARD LENGTH=395 | SoyBase | E_val: 1.00E-90 | ISS |
| GO:0000902 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell morphogenesis | SoyBase | N/A | ISS |
| GO:0006302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: double-strand break repair | SoyBase | N/A | ISS |
| GO:0006355 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of transcription, DNA-dependent | SoyBase | N/A | ISS |
| GO:0010090 | GO-bp | Annotation by Michelle Graham. GO Biological Process: trichome morphogenesis | SoyBase | N/A | ISS |
| GO:0010332 | GO-bp | Annotation by Michelle Graham. GO Biological Process: response to gamma radiation | SoyBase | N/A | ISS |
| GO:0042023 | GO-bp | Annotation by Michelle Graham. GO Biological Process: DNA endoreduplication | SoyBase | N/A | ISS |
| GO:0051301 | GO-bp | Annotation by Michelle Graham. GO Biological Process: cell division | SoyBase | N/A | ISS |
| GO:0051302 | GO-bp | Annotation by Michelle Graham. GO Biological Process: regulation of cell division | SoyBase | N/A | ISS |
| GO:0051782 | GO-bp | Annotation by Michelle Graham. GO Biological Process: negative regulation of cell division | SoyBase | N/A | ISS |
| GO:0005634 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleus | SoyBase | N/A | ISS |
| GO:0005667 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: transcription factor complex | SoyBase | N/A | ISS |
| GO:0005730 | GO-cc | Annotation by Michelle Graham. GO Cellular Compartment: nucleolus | SoyBase | N/A | ISS |
| GO:0003677 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: DNA binding | SoyBase | N/A | ISS |
| GO:0003700 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: sequence-specific DNA binding transcription factor activity | SoyBase | N/A | ISS |
| GO:0005515 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein binding | SoyBase | N/A | ISS |
| GO:0046982 | GO-mf | Annotation by Michelle Graham. GO Molecular Function: protein heterodimerization activity | SoyBase | N/A | ISS |
| PTHR12081 | Panther | E2F | JGI | ISS | |
| PTHR12081:SF18 | Panther | E2F4,5 | JGI | ISS | |
| PF02319 | PFAM | E2F/DP family winged-helix DNA-binding domain | JGI | ISS | |
| UniRef100_G7J4Q9 | UniRef | Annotation by Michelle Graham. Most informative UniRef hit: Transcription factor E2F5 n=1 Tax=Medicago truncatula RepID=G7J4Q9_MEDTR | SoyBase | E_val: 3.00E-137 | ISS |
| UniRef100_UPI00023398DE | UniRef | Annotation by Michelle Graham. Best UniRef hit: UPI00023398DE related cluster n=1 Tax=unknown RepID=UPI00023398DE | SoyBase | E_val: 0 | ISS |
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Glyma06g02738 not represented in the dataset |
Glyma06g02738 not represented in the dataset |
| Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection |
Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome |
| Paralog | Evidence | Comments |
|---|---|---|
| Glyma04g02720 | IGC | Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3. |
| Corresponding Name | Annotation Version | Evidence | Comments |
|---|---|---|---|
| Glyma.06g024900 | Wm82.a2.v1 | IGC | As supplied by JGI |
| Schmutz et al. 2010 Genome sequence of the palaeopolyploid soybean Nature 2010, 463:178-183 |
>Glyma06g02738.2 sequence type=transcript gene model=Glyma06g02738 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTACGTGAGAGAAGCCCAAAAAGGAGCCCAGAAAGTGAGGCCCAAAAGGAAAAGAAAAGGGCGGGGTGGCGTGTGCATTCGAACTGAACTGACCGCTTTTTTTGCGTTGGTGTTGGCGGCCACACCGTATCAAACTTTCACTTTCACTTCTCTTTTCTCTTTCCTATTGCTATATATAACAGTCTTACTGTTTCACACACAAACCCTCTCTCTCGTATCTTCCATCTCACTTCAAATTCATTCTCCCTTTCCTAATATGAGTCAAAGATATGACAACAATGTTTTCAAATCTCACATAAATAATATCCAACTTGCTCCTGGTATCACCGAAACACTTCATCTTCCTCCCCCACTTCAAACCGAGCCTACCATAAGAGGAAAGCAAAATGGTAAATCAAAAGGTCCAAGAAATGCAAAATCTGCGAATGCCGATTCCCCTAATTCGACTGCAGTTAACAATTGTCGCTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTGAGCTTAATCCAGGATGCTAAGGATGGAACGCTGGATCTAAATAGAACCGCCGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGGGTAGGATTGATAGAGAAAACATCAAAGAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCTCAAGAACTGGAAGACCAAGTTAATAGTCTAAAGGCAGAAGTTGATAGTCTATATGCCGAGGAATCCGAACTGGATGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGGAGGAAAGCGAAAGCTCTCAAAAGTACCTTTTTTTAACCAAGGAAGATATTCTTAGCCTTCCCTGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTGCATCGAGGTCCCTGATCCTGATGAGGAATTAGGTTTTCGGCAAAGGCAGTACAAAATGATTGTTCGAAGTGCCATTGGACCAATAAATTTGTATCTCTTGAGCAAGGACGACAGCAAGTTTGAGGATGATAGTGCCAAACGGATGAAATTAATGGATCCATCATGGAATAGTGATCCCATCAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAACATGATGAAAAAAATCCTTCTGAGCATTTCAGTTTGCAGGGTTCACAAGCATTTGGAATTCAAGAAATTACTCCCACGGATTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCAAACAGAATTGAAATGAGTAGTTGGTTCAGATAGATGTGCTTCAAGACGATTAATCCAATAAGAAGTGTGGGATTTGCTTGAACACAAGCTTCACTAACAGATACGATTAATAAGAGATAGACTTTTAATTGTTCCAGACGGCACACAGGGTACATTTCAAACTGTAAATTTTAGCTCTTTTTTTTGGCTCTTTTCTATCAGCAGTTGCCTTAACTAGGATAATTGTGTCCTAGTTCTACAATGTAACTTATGAATGAATAAGATTGAGATATAACTTCTAAAATAGAATTGTTTCAAACCTATTATAGCTTTACATGGACAAAGCCATAAATCCTCTCCCAATAAAGTTTCAAACTATCTAGGATAATTGCACTTTTTT
>Glyma06g02738.1 sequence type=CDS gene model=Glyma06g02738 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTACGTGAGAGAAGCCCAAAAAGGAGCCCAGAAAGTGAGGCCCAAAAGGAAAAGAAAAGGGCGGGGTGGCGTGTGCATTCGAACTGAACTGACCGCTTTTTTTGCGTTGGTGTTGGCGGCCACACCGTATCAAACTTTCACTTTCACTTCTCTTTTCTCTTTCCTATTGCTATATATAACAGTCTTACTGTTTCACACACAAACCCTCTCTCTCGTATCTTCCATCTCACTTCAAATTCATTCTCCCTTTCCTAATATGAGTCAAAGATATGACAACAATGTTTTCAAATCTCACATAAATAATATCCAACTTGCTCCTGGTATCACCGAAACACTTCATCTTCCTCCCCCACTTCAAACCGAGCCTACCATAAGAGGAAAGCAAAATGGTAAATCAAAAGGTCCAAGAAATGCAAAATCTGCGAATGCCGATTCCCCTAATTCGACTGCAGTTAACAATTGTCGCTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTGAGCTTAATCCAGGATGCTAAGGATGGAACGCTGGATCTAAATAGAACCGCCGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGGGTAGGATTGATAGAGAAAACATCAAAGAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCTCAAGAACTGGAAGACCAAGTTAATAGTCTAAAGGCAGAAGTTGATAGTCTATATGCCGAGGAATCCGAACTGGATGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGGAGGAAAGCGAAAGCTCTCAAAAGTACCTTTTTTTAACCAAGGAAGATATTCTTAGCCTTCCCTGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTGCATCGAGGTCCCTGATCCTGATGAGGAATTAGGTTTTCGGCAAAGGCAGTACAAAATGATTGTTCGAAGTGCCATTGGACCAATAAATTTGTATCTCTTGAGCAAGGACGACAGCAAGTTTGAGGATGATAGTGCCAAACGGATGAAATTAATGGATCCATCATGGAATAGTGATCCCATCAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAACATGATGAAAAAAATCCTTCTGAGCATTTCAGTTTGCAGGGTTCACAAGCATTTGGAATTCAAGAAATTACTCCCACGGATTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCAAACAGAATTGTGGGGAAATGAGTAG >Glyma06g02738.2 sequence type=CDS gene model=Glyma06g02738 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high ATGGTTTACGTGAGAGAAGCCCAAAAAGGAGCCCAGAAAGTGAGGCCCAAAAGGAAAAGAAAAGGGCGGGGTGGCGTGTGCATTCGAACTGAACTGACCGCTTTTTTTGCGTTGGTGTTGGCGGCCACACCGTATCAAACTTTCACTTTCACTTCTCTTTTCTCTTTCCTATTGCTATATATAACAGTCTTACTGTTTCACACACAAACCCTCTCTCTCGTATCTTCCATCTCACTTCAAATTCATTCTCCCTTTCCTAATATGAGTCAAAGATATGACAACAATGTTTTCAAATCTCACATAAATAATATCCAACTTGCTCCTGGTATCACCGAAACACTTCATCTTCCTCCCCCACTTCAAACCGAGCCTACCATAAGAGGAAAGCAAAATGGTAAATCAAAAGGTCCAAGAAATGCAAAATCTGCGAATGCCGATTCCCCTAATTCGACTGCAGTTAACAATTGTCGCTATGACAGTTCCTTAGGACTGTTAACCAAGAAATTTGTGAGCTTAATCCAGGATGCTAAGGATGGAACGCTGGATCTAAATAGAACCGCCGAGATCTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGGGTAGGATTGATAGAGAAAACATCAAAGAATCATATACAGTGGAAGGGATGTGATGGACTTGGGCCTCAAGAACTGGAAGACCAAGTTAATAGTCTAAAGGCAGAAGTTGATAGTCTATATGCCGAGGAATCCGAACTGGATGATTGTATAAGGAAAAAGCAGGAGCTTCTAAGAAACCTGGAGGAAAGCGAAAGCTCTCAAAAGTACCTTTTTTTAACCAAGGAAGATATTCTTAGCCTTCCCTGCTTCCAGAATCAAGAAATTATTGCAATCAAGGCTCCAAAAGCTAGTTGCATCGAGGTCCCTGATCCTGATGAGGAATTAGGTTTTCGGCAAAGGCAGTACAAAATGATTGTTCGAAGTGCCATTGGACCAATAAATTTGTATCTCTTGAGCAAGGACGACAGCAAGTTTGAGGATGATAGTGCCAAACGGATGAAATTAATGGATCCATCATGGAATAGTGATCCCATCAGAAAGAGGGGTGTGGGATTATTAGAAAGCCAACATGATGAAAAAAATCCTTCTGAGCATTTCAGTTTGCAGGGTTCACAAGCATTTGGAATTCAAGAAATTACTCCCACGGATTTTGAAATGGAAGATGACTATTGGTTTCAATCAGATCCTGGAGTGAGCCAAACAGAATTGAAATGA
>Glyma06g02738.1 sequence type=predicted peptide gene model=Glyma06g02738 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVYVREAQKGAQKVRPKRKRKGRGGVCIRTELTAFFALVLAATPYQTFTFTSLFSFLLLYITVLLFHTQTLSLVSSISLQIHSPFPNMSQRYDNNVFKSHINNIQLAPGITETLHLPPPLQTEPTIRGKQNGKSKGPRNAKSANADSPNSTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPQELEDQVNSLKAEVDSLYAEESELDDCIRKKQELLRNLEESESSQKYLFLTKEDILSLPCFQNQEIIAIKAPKASCIEVPDPDEELGFRQRQYKMIVRSAIGPINLYLLSKDDSKFEDDSAKRMKLMDPSWNSDPIRKRGVGLLESQHDEKNPSEHFSLQGSQAFGIQEITPTDFEMEDDYWFQSDPGVSQTELWGNE* >Glyma06g02738.2 sequence type=predicted peptide gene model=Glyma06g02738 sequence assembly version=Glyma 1.0 annotation version=1.1 JGI Gene Call confidence=high MVYVREAQKGAQKVRPKRKRKGRGGVCIRTELTAFFALVLAATPYQTFTFTSLFSFLLLYITVLLFHTQTLSLVSSISLQIHSPFPNMSQRYDNNVFKSHINNIQLAPGITETLHLPPPLQTEPTIRGKQNGKSKGPRNAKSANADSPNSTAVNNCRYDSSLGLLTKKFVSLIQDAKDGTLDLNRTAEILEVQKRRIYDITNVLEGVGLIEKTSKNHIQWKGCDGLGPQELEDQVNSLKAEVDSLYAEESELDDCIRKKQELLRNLEESESSQKYLFLTKEDILSLPCFQNQEIIAIKAPKASCIEVPDPDEELGFRQRQYKMIVRSAIGPINLYLLSKDDSKFEDDSAKRMKLMDPSWNSDPIRKRGVGLLESQHDEKNPSEHFSLQGSQAFGIQEITPTDFEMEDDYWFQSDPGVSQTELK*
| Funded by the USDA-ARS. Developed by the USDA-ARS SoyBase and Legume Clade Database group at the Iowa State University, Ames, IA | ||
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