Glyma06g02640 - SoyBase

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Report for Sequence Feature Glyma06g02640

Feature Type:	gene_model
Chromosome:	Gm06
Start:	1782364
stop:	1787491
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma06g02640

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT1G30755	AT	Annotation by Michelle Graham. TAIR10: Protein of unknown function (DUF668) \| chr1:10905991-10908773 REVERSE LENGTH=615	SoyBase	E_val: 0	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
PF05003	PFAM	Protein of unknown function (DUF668)	JGI		ISS
PF11961	PFAM	Domain of unknown function (DUF3475)	JGI		ISS
UniRef100_Q9SA91	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: T5I8.21 protein n=1 Tax=Arabidopsis thaliana RepID=Q9SA91_ARATH	SoyBase	E_val: 2.00E-146	ISS
UniRef100_UPI00023398DB	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI00023398DB related cluster n=1 Tax=unknown RepID=UPI00023398DB	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma06g02640

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma06g02640

Paralog	Evidence	Comments
Glyma04g02600	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma06g02640 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.06g024000	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma06g02640

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma06g02640

Limit To All Plant Sequences

>Glyma06g02640.1   sequence type=CDS   gene model=Glyma06g02640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGAGCGGTTTGTTCGGCTGGTATGGTGGAGAAAAATGGTGAACTTGGAGGGAAGAGTTTGGGGTTTTCTGGGAAGCTTAAGAAGGAAAATAGCTTTGTGAATCGGAGAGAAGCTTTTTCAGATTCAAGGTCTAATAGTGGTCATGATAGAAAGAAAAAGAAGCATGATACTGGGTTTTCCCGTGAACTTGGTCTATCGATTCCTTCACCTGGGGGAAAACAGGTGAACCAGAGGGGTTCTTTTCTGGGAAAAGCAGGTGAGAGAGCAGTGGAAGTTCTGGACACAATTGGAAGTGGCATGCCAAAGTTAAACACTAATACTGGGTTTGTCTCTGGCACAACTTTTAGAGGGAATAAGATATCAATACTGGCATTCGAAGTAGCTAATACAATAACCAAAGGAGCAATTTTGTTTCAATCACTTGCTGAAGAAAACATTCAGTTCCTTAAAAATGAGGTTTTACAATCGGAGGGGGTTCAGCTATTGGTATCGAATGATGTGGAGAAGTTAATAACTCTTGCTGAGGCTGACAAAAGGGAAGAACTCAATGTCTTCTCAAGGGAAGTAATTAGGTTTGGAAATATGTGTAAAGATCCACAGTGGCACAACCTAGACAGATATTTCTCAAGATTAGACTTTGATGTCCTGGATGACAAACGATATCAGGAAGATGCAGAAAAGACGATGCAGGAGTTTACCAGCCTAGTTCGGAATACTGCTGAATTATACCATGAGTTAAATGCTTATGAACGTTTTGAACAAGATTATCTGCAAAAGATTAAGGAAATGGAGTCCTTAAATCTTCCTCTAAAAGGGGAGAGTATCACAATGTTTCAAAGTGAGCTAAAGCACCAAAGAAAGCTTGTGAGGAGCTTGAAAAAGAAGTCTCTTTGGTCCAGAACTTTGGAAGAGATAGTTGAAAAGCTTGTAGATATTGTTACCTATATACATCAAGCAATTTATGAGTTCGCTGGAAATCATGGTACAGCTGCAACCAAGCACAGTGAGGGTTCTGAAAGACTAGGAGAAGCTGGTCTTGCACTGCACTATGCTAACATCATCAATCAGATAAATATGGTTGCATCTCGCCCAACTGCTCTTCCTCCAAACACCAGAGACACATTGTATCATGGTTTGCCCAACAATATTAAGGCTGCTCTTCCATCCCAGTTGCAAACCATTGGTGACATGAAAGAGCTCTCCATCACTCGGATCAAAGCTGAAATGGATAAGATTCTTCAGTGGCTTGCACCACTTGCTACAAATACAGTCAAAGCACATCAAGGTTTCGGATGGGTTGGTGAATGGGCAAACGCAAGTAATGACTTTGGTGATAACACCTCCAAAGAAAGTAACCTGATTCGCCTGGAGACACTTTATTACGCTGATAAGAGGAAGATAGATGTTTACATCATTGAATTGTTGGCATGGCTTCACCATTTGATTAGCTCTGTAAAATCTAGACAGAATACCTTGAGACCAATGCCTACAACACGGTCTCCTCCAAAAGGACTCGAACTTCAGTCTAAGATGCGACAGTTTTTAATTCTATCTGTGGATAGTAGCAACAAGCCGTTGGGAACTCAAATTTCTCATGAGGATAGGAGACTATTGGAGGAGGTTATTGCAAGGAGAAAGAGTCCAGGACTTAGCAAAAGTGAGGATCTTGGTTTGGCCAAGAAAAGACACGTCAAACATTTGCAAGTGACCAAAAGTGCTGGGAGTTCACCTGCCAAGGAATTCTTCGGTACAAGACAAGTCTTTAACCACCAAAACTATAACGTTTTGGATATTATGGATGGGTTGGGTTACTGA

Predicted protein sequences of Glyma06g02640

Limit To All Plant Sequences

>Glyma06g02640.1   sequence type=predicted peptide   gene model=Glyma06g02640   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGAVCSAGMVEKNGELGGKSLGFSGKLKKENSFVNRREAFSDSRSNSGHDRKKKKHDTGFSRELGLSIPSPGGKQVNQRGSFLGKAGERAVEVLDTIGSGMPKLNTNTGFVSGTTFRGNKISILAFEVANTITKGAILFQSLAEENIQFLKNEVLQSEGVQLLVSNDVEKLITLAEADKREELNVFSREVIRFGNMCKDPQWHNLDRYFSRLDFDVLDDKRYQEDAEKTMQEFTSLVRNTAELYHELNAYERFEQDYLQKIKEMESLNLPLKGESITMFQSELKHQRKLVRSLKKKSLWSRTLEEIVEKLVDIVTYIHQAIYEFAGNHGTAATKHSEGSERLGEAGLALHYANIINQINMVASRPTALPPNTRDTLYHGLPNNIKAALPSQLQTIGDMKELSITRIKAEMDKILQWLAPLATNTVKAHQGFGWVGEWANASNDFGDNTSKESNLIRLETLYYADKRKIDVYIIELLAWLHHLISSVKSRQNTLRPMPTTRSPPKGLELQSKMRQFLILSVDSSNKPLGTQISHEDRRLLEEVIARRKSPGLSKSEDLGLAKKRHVKHLQVTKSAGSSPAKEFFGTRQVFNHQNYNVLDIMDGLGY*

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